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The Wire
#Length
Wire posts tagged with 'Length'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
1034 days ago
Fold the FASTA sequences with length $ fold -w 100 genome.fa
#Fasta
#Genome
#Fold
#Break
#Length
Aaryan Lokwani
@aaryan
Thread
By
Aaryan Lokwani
2344 days ago
Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai
#Fasta
#Index
#Length
#Count
#Size
#Samtools
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
2859 days ago
Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa
#Length
#Linux
#OneLiner