BOL

Understanding mutiple alignment format http://www.bx.psu.edu/~dcking/man/maf.xhtml #MSA #Format #Alignment

Toy example comparing several MSA algorithms http://wiki.bits.vib.be/index.php/Multiple_sequence_alignment #Alignment #MSA #Algorithms

There is a new tool "Mugsy" which is a multiple whole genome aligner. http://mugsy.sourceforge.net/ #MSA #Alignments

MSA tools http://en.wikipedia.org/wiki/List_of_alignment_visualization_software , http://www.ebi.ac.uk/Tools/msa/ #MSA #Alignments