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The Wire
#Sort
Wire posts tagged with 'Sort'
Jit
@jit.aber
Thread
By
Jit
1399 days ago
sort the string which combined with string + numeric using bash script. $ sort -V
#Sort
#sort
#number
#string
Jit
@jit.aber
Thread
By
Jit
1584 days ago
Sort and get the best first of duplicated lines $ sort -k3rn file | sort -u -k1,1
#Sort
#Duplicated
#Value
Hardeep Kaur
@hardeep
Thread
By
Hardeep Kaur
2316 days ago
sort -k2 -n genome.fa
#Sort
#Column2
#Bash
Jit
@jit.aber
Thread
By
Jit
2569 days ago
Sort a file with column 2: sort -g -k 2,2 allPacbio.fa.fai > sorted.fai
#sort
#file
#column
Jit
@jit.aber
Thread
By
Jit
3069 days ago
Check if BAM file is sorted or not use: for F in `find . -name "*.bam"`; do echo $F; samtools index ${F} ; done
#Sort
#BAM
#Trick
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
3388 days ago
Sort FASTA sequence by length: cat f1.fasta| awk '{if($0 ~ /^>/){printf "%st", $0}else{print length($0)"t"$0}}'| sort -k2n,2| awk '{print $1"n"$3}' > sequence.fasta
#Sort
#Fasta
#Trick
#Onliner