BOL

Building a #consensus sequence with #vcf files https://cbc.brown.edu/blog/consensus-vcf/

#Calculate The #Frequency Of Letters In A Biological Sequence, Or The #Consensus Matrix Of A Set Of Sequences https://www.rdocumentation.org/packages/Biostrings/versions/2.40.2/topics/letterFrequency

Scripts to help transposable elements consensus sequences curation https://github.com/4ureliek/ReannTE #Transposable #TE #consensus #ReannTE

how to polish a genome assembly https://nanopolish.readthedocs.io/en/latest/quickstart_consensus.html #polish #nanopolish #ont #nanopore #consensus

Generate consensus from BAM file samtools mpileup -uf chr5B_leaf_rust.fasta M27454_5B_reads_sorted.bam | bcftools call -c | vcfutils.pl vcf2fq #BAM #Consensus

Consensus of nucleotide sequences https://www.perlmonks.org/bare/?node_id=500962 #Consensus #Nucleotide #DNA

Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly