Results for "Awk"


  • Awk


    Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner. Useful Weblinks:

    Tags: awk, gawk, nawk, sed, data, sequencing, one liner

    1500 days ago

  • Print all the values beetween a pattern "abc" > awk '/abc/{flag=1;next}/mno/{flag=0}flag' file #awk #print #range #pattern

    Tags: awk, print, range, pattern

    589 days ago

  • Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner

    Tags: awk, oneliner

    120 days ago

  • Replace space with tab. $ awk -v OFS="\t" '$1=$1' file1 #tab #space #replace #awk

    Tags: tab, space, replace, awk

    43 days ago

  • Remove duplicated lines from text file. $ awk '!seen[$0]++' allIds #duplicate #lines #remove #awk

    Tags: duplicate, lines, remove, awk

    41 days ago

  • Most Commonly used Awk by Bioinformatician

      Awk is a programming language that is specifically designed for quickly manipulating space delimited data. Although you can achieve all its functionality with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep | sed | cut...' with a single ...

    Tags: Awk, Bioinformatics

    1493 days ago

  • sahabuddin

    Bioinformatics researcher

    Skills: Perl, Awk, Python, R

    87 days ago