Results for "Blocks"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ynteny as the conservation of blocks of order within two sets of c...veral researches on conserved blocks and non-conserved regions to...-new-tool-for-mining-syntenic-blocks) A new tool for mining synte...changes of genomic regulatory blocks (GRBs) in vertebrate genomes,...2601 days ago
Computer simulation of genetic mechanism !!
...nomics. http://egglib.sourceforge.net/ EpiSIM EpiSIM: simulation of multiple epistasis, linkage disequilibrium patterns and haplotype blocks for genome-wide interaction a...2966 days ago
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Bookmarks
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filteri...2725 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...tness of both. GAM-NGS does not rely on global alignment: regions of the two assemblies representing the same genomic locus (called blocks) are identified through reads...2685 days ago
- +12 more Bookmarks
Pages
- ...career paths of our graduates. Elementary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast, blitz, blaze, flash, blocks. Bioinformatics in Sup...
3912 days ago
Top-level pages
Tools for Searching Repeats And Palindromic Sequences
...found at the centromeres and telomeres of chromosomes these are duplications of more complex 100-200 base sequences.Segmental Duplications - Large blocks of 10-300 kilobases which are...2202 days ago
Awk for Bioinformatician and computational biologist
...Tcontig3contig4 ACTTATATATATATAcontig5 ACTTTATATATTYou can have as many blocks as you want and they will be...ntig4contig5 contig5 contig5 Although, we can also skip executing later blocks for a given line by using nex...2271 days ago
Wire posts
News
- ...Dr Jong Bhak of Genome Research Foundation, South Korea, decoded as many as 3 billion nucleotides (organic molecules that form the basic building blocks of nucleic acids, such as DNA...
3874 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...mputational domain, where unrelenting computational power is required to decipher pieces of data generated through high throughput techniques into blocks of information that will help...3836 days ago
- +1 more News
Video
How DNA is Packaged (Advanced)
...of one continuous thread-like molecule of DNA coiled tightly around proteins, and contains a portion of the 6,400,000,000 basepairs (DNA building blocks) that make up your DNA. Orig...3868 days ago
How far can bioinformatics go creating organisms used for testing?
...utational Biophysics at KTH Royal Institute of Technology is telling us about his work. From the episode "Science for life – mapping the building blocks of the human body". Watch the...3479 days ago
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2131 days ago
Tags
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
Tags: Tool, Conversion, Recover, Synteny, Blocks, Multiple, Alignment, MAF, Format, maf2synteny
2535 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are c...Tags: CSBFinder, Discovery, colinear, syntenic, blocks, prokaryotic, genomes
2011 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...oose" usually produces fewer blocks, but longer. And it may lose some small synteny blocks (shorter than 15 000 BP), w...on "d3" visualization"). The blocks are also can be visualized wi...s used for generating synteny blocks. To understand the graph, see...1276 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...uch high efficiency was attained by implementing a mathematically effective algorithm using C++. https://phys.org/news/2020-06-scientists-synteny-blocks-animals.html https://github....1402 days ago
- +4 more Comments
