Results for "BroadInstitute"
Blogs
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of different...1133 days ago
Computer simulation of genetic mechanism !!
...ttp://users-birc.au.dk/mailund/coasim/index.html cosi The cosi package is written in C and is available as a tar file. http://www.broadinstitute.org/~sfs/cosi/ CS-PSeq...2966 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...ysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis http://www.broadinstitute.org/gatk/ Metagenomics:http:...3478 days ago
Integrative Genomics Viewer (IGV) tutorial
...that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/igv/...3575 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short rea...2676 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to a...3770 days ago
List of bioinformatics open source projects/software.
...tific workflow and data integration system GenePattern http://www.broadinstitute.org/cancer/software/genepatte...sktop genome browser Integrative Genomics Viewer (IGV) http://www.broadinstitute.org/igv/ High-performance de...3747 days ago
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Wire posts
Video
Des Higgins: Visualizing Multiple Sequence Alignments
...http://www.vizbi.org) funded by NIH & EMBO. For information about data visualization efforts at the Broad Institute, please visit: http://www.broadinstitute.org/node/1363/3712 days ago
Bio-Scripts
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/releases/download/4.0.2.1/gatk-4.0.2.1.zip --2018-08-30 11:47:20-- https://github.com/broadinstitute/gatk/releases/download/4.0.2....
2066 days ago
- ...table. To exit the virtual environment run the command source deactivate. # download and unzip cd ~/workspace/bin wget https://github.com/broadinstitute/gatk/releases/download/4.0.2....
802 days ago
Tags
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both designed for state-of-the-art data. Their inputs are chosen to optimize quality while keeping costs low. Currently it takes as input Illumina reads of length 250 or longer — produced on MiSeq or HiSeq 2500 &m...
Tags: Bioinformatics, NGS, Assembly, DISCOVAR, Variants, BroadInstitute
2929 days ago
Comments
Comment on "Biological databases !"
all GATK bundle at ftp://ftp.broadinstitute.org/bundle/hg38/1528 days ago
- AfterQC AfterQC - Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. dupRadar dupRadar. An R package which provides fu...
2128 days ago
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