Results for "DNA sequencing"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...-perl - BioPerl core perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3941 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological da...he great biological programmer also read about the BioPerl packages, genomics, DNA string...3941 days ago
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Bookmarks
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3940 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the la...following fundamental topics in bioinformatics: assembling genomes, comparing DNA and pr...
3935 days ago
- +340 more Bookmarks
Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3551 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3422 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3942 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3935 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, i...s:Sequence analysis Sequence and Site objects, with various Alphabet support (DNA, RNA,...3938 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an...3938 days ago
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Top-level pages
- ...enome drafts was just a start of the modern DNA sequencing era which resulted in...new advanced strategies of high-throughput DNA sequencing, so called the “high-th...cing” (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3938 days ago
- ...matics component. The goal of sequencing projects, for example,...s Genbank or EMBL for primary DNA sequences). The data can be submitte...ce data: The primary data of sequencing projects are DNA sequences. T...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3938 days ago
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Wire posts
News
- ...e Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA record by about 10 times...ml http://www.natureworldnews.com/articles/5052/20131123/oldest-dna-sequenced-done-breakthrough-technolo...
3802 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named UK Genome Science mee...ture state of all aspects and applications of Next Generation Sequencing. More at >> http:...3909 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 l...y Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3939 days ago
- ...ated data that underlies this project consists of high-throughput sequencing of DNA and mRNA of populations and isolates...a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine lea...
3939 days ago
- +119 more Opportunity posts
ResearchLabs posts
- Melanie Bahlo is an applied statistician working in the areas of statistical genetics, bioinformatics and popula...a: Mapping loci in ENU mutants in mice in complex pedigrees Investigation of DNA sharin...
3938 days ago
- The human genome project and similar projects in disease-causing organisms such as...ethods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3938 days ago
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Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3899 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data...l graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3893 days ago
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Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences #...= x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotid...').read().split("\n")[1:] allseq[nm] = ''.join(dna) im...1127 days ago
- #!/usr/bin/perl use strict; use warnings; #assign strings to variables my $DNA = "GATTACACAT"; my $polyA = "AAAA"; #concatenate two strings my $modifiedDNA = $DNA.$polyA; #calculate...value of the variable and its length my $DNAlength...
2908 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioinformaticians are in high...xplosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3407 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3188 days ago
Groups
INTIMATE secrets hidden in your DNA could be stolen without you even realising. By taking a glass from which you...a "genome hacker" could obtain a comprehensive scan of your genome, revealing DNA varian...3943 days ago
Python is a programming language that lets you work more quickly and integrate you.... Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3936 days ago
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Tags
- -Nature Publishing Group selected single-cell sequencing as Method of the Year for 2013. ->100 peer-reviewed single-cell publications based on Fluidigm technology Source: http://online.wsj.com/article/PR-CO-20131231-904382.html About Single-Cell Sequencing: http://bernstein.harvard.ed...
Tags: Single-Cell Sequencing, DNA sequencing, single-cell mRNA sequencing, transcriptome analysis
3767 days ago
Algorithms for DNA Sequencing (course offered each month)
"We will learn computational methods -- algorithms and data structures -- for analyzing DNA sequencing data. We will learn a little about DNA, genomics, and how DNA sequencing is used. We will use Python to implement key algorithms and data structures and to analyze real genomes and DNA sequencin...Tags: algorithms, bioinformatics, DNA sequencing
3197 days ago
Comments
Comment on "China’s BGI says it can sequence a genome for just $100"
https://news.bloomberglaw.com/ip-law/illumina-hits-rival-bgi-with-new-dna-sequencing-patent-lawsuit1518 days ago
- ...The Python script htseq-qa takes a file with sequencing reads (either raw or a...-platform quality analysis pipeline for deep sequencing data. NGS QC Toolkit NG...QC3 a quality control tool designed for DNA sequencing data for raw data, alignment,...
2128 days ago
- +13 more Comments
