Results for "Data"
Users
About me: ...tional pipeline, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcr...bioinformatics area to get distracted by the flood of NGS and epigenomic data, but currently we (our group...yesterday
- Skills: NGS data analysisSkills: MV data analysis
1353 days ago
- +28 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install seve...use "yum" for the rescue. Dont worry biological data cruncher, this is true we are...scanning (atstart or never)? [atstart]Cache metadata (yes/no)? [yes]Policy on buil...3941 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological programmer or bioinformatician involves m...3941 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3936 days ago
- ...and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background of software/tool to better explain the data computationally. I fou...
3936 days ago
- +459 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly...3944 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...ctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...nbsp; Source Code: Matlab Conclusion/Implementation: Here discriminant data mining approach was used to p...3936 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...might not be one specific language but a few that lend themselves best to Bio-informatics work that is math heavy and deals with a large amount of data....3943 days ago
- ...quences being stored is increasing rapidly, but the actual amount of new data is very small. In other words....html http://en.wikipedia.org/wiki/Compression_of_Genomic_Re-Sequencing_Data http://www.nature.com/nbt/jo...
3911 days ago
Pages
Bio++ : C Language libraries for your biological need
...ote Acnuc Access), allowing you to fetch public databases like GenBank, EMBL or Sw...tc. Phylogenetics and molecular evolution Data structure and IO Phylogeneti...rface (works with Function objects).Statistics: DataTable object, with I/O from CS...3939 days ago
- ...our graduates. Elementary Sequence Analysis - Database Searching by B. Gold...uting Division. Protein Sequence Alignment and Database Scanning Geoff Barto...ranca, Bio-IT World , Dec. 10, 2002. Data stored in multiplying bacteri...
3912 days ago
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Top-level pages
- ...f large amounts of biological data, using networks of computers and databases." - from the glossary fo...medical, behavioral or health data, including those to acquire,...ctures are stored in specific databases (for example, the Protei...sis of structural and genomic data will certainly get more impor...
3938 days ago
- ...ictive information from large databases. Data mining is becoming an increas...n answer. This is exploratory data analysis, one of the most dif...ustrating positions to be in. Data mining is a huge field and ca...covering hidden value in your data warehouse:http://www.thearlin...
3937 days ago
- +61 more Top-level pages
Wire posts
News
- InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante. http://www.interpretomics.co/
3911 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots f...3931 days ago
- +62 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...ian to analyze Next Generation Sequencing (NGS) data analysis. In the context of a...signs in order to ensure compliance of produced datasets with pipelines requiremen...s computational facilities and expertise in NGS data analysis, and will benefit as...3940 days ago
- ...These technologies produce large amounts of raw data that can be transformed into...cal sense from the growing amount of biological data becoming available and turn b...ks that are based on a combination of published data. An important part of the gen...
3940 days ago
- +249 more Opportunity posts
ResearchLabs posts
- ...scovery in biology and have accelerated the development of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analys...
3939 days ago
- ...this revolution requires the marriage of researchers from mathematical and biological backgrounds. Research Area: Linear models for microarray data Digital gene expression tech...
3939 days ago
- +38 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
...Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...apke pass hai. BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformati...3909 days ago
The Best Bioinformatics / Computational Biology Quotes
...is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank god, my genome just c...3711 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...n the 21st Century: Making Sense out of Massive Data Air date: Wednesday...exponential increase in genomic and biomedical data, which will soon outstrip adv...ysis. Extracting new science from these massive datasets will require not only fas...3893 days ago
Bioinformatics -- Understanding of living systems through information science
...example, to predict whether individuals are susceptible to cancer, or to certain lifestyle-related diseases, by understanding their personal genome data. So, I think it's amply possi...3908 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1208 days ago
Python script to download covid genome !
....efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as f: j...1127 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
...alified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome proj...echniques. Bioinformatics provides the tools to analyse and exploit such data sets.Can you please suggest m...3407 days ago
At what age did you gain passion in Bioinformatics?
Most of the bioinformatician were biologist ( yeah ... not all ;), and at later stage they gain a passion in Bioinformatics and learn it. When did you get inclined towards computational analysis of biological data?3230 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...by evaluating the globally produced biological data to derivate unified solutions...and comparison of high-throughput experimental data in an integrated manner and b...cus and aim? With the increasing amount of data in databases, there is alread...2353 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file for...3894 days ago
...hics. The R language is widely used among statisticians and data miners for developing statistical software and data analysis. R's popularity has...r the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R stat...3942 days ago
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Tags
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinformatics- cheminformatics resource combining detailed drug data with comprehensive drug target information with >4900 drug (~3500 experimental) and >1500 non-redundant protein entries http://www.drugban...Tags: resources, therapy, disease, drug, drug-target, network, data
1425 days ago
Five key traits to seek out in potential bioinformatics candidates !!!
Genomics and proteomics data are being collected in bulk, but mostly, traditional biologist don’t know what to do with it. Perhaps this is the reason why (not only this!!! ) computational biologist/bioinformatics scientists are hot commodities in the research world. In fact, there are huge...Tags: Bioinformatics, Computational Biology, Education, Career, PostDoc, Study, Hire, Trait, Candidate, Data
3182 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...parameters used for SPAdes and the evaluation tools may vary depending on the specific research question and the characteristics of the sequencing data....406 days ago
- ...ution, insertion, and deletion errors. dwgsim: dwgsim is a short read simulator that can generate synthetic reads from whole genome sequencing data. It is designed to simulate r...
406 days ago
- +111 more Comments
