Results for "Ensembl"
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...ation pipeline developed at the Victorian Life Sciences Computation Initiative (VLSCI), University of Melbourne. It is based around BWA, GATK and ENSEMBL and was originally designed f...3644 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are o...le analysis of chordate genome data. Ensembl computes pairwise and multipl.... Gene alignments are used to define Ensembl Protein Families, GeneTrees a...r and different alignment views. The Ensembl comparative genomics infrastr...2980 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information f...annotation objects are displayed in Sockeye by using custom 3D models. Ensembl-derived and imported sequence...
2626 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...e in all the ancestral species within the phylogenetic range of interest. All the data on extant species displayed in this browser are from Ensembl.2351 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2250 days ago
Ensembl Variation - Calculated variant consequences
For each variant that is mapped to the reference genome, we identify all overlapping Ensembl transcripts. We then use a rule-based approach to predict the effects that each allele of...2056 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...orks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal...thways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), Ensembl plants...1424 days ago
- ..., is often subjective. And that's what this project attempts to standardize. The vcf2maf and maf2maf scripts leave most of that responsibility to Ensembl's VEP, but allows you to over...
862 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...e in all the ancestral species within the phylogenetic range of interest. All the data on extant species displayed in this browser are from Ensembl. Summary statistics of Genom...788 days ago
- ...an 60 species. The 98 different namespaces supported for human include Ensembl, Refseq, Illumina, Entrezgene...rot identifiers. All namespaces are obtained through matching them via Ensembl gene identifiers as a referen...
342 days ago
