3225 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...p is a novel mapper targeted at aligning long, error-prone third-generation sequen...sp;can handle a wide range of read lengths and error profiles, including: Ill...y important feature for technologies where the error rates and error profiles can...3216 days ago
REAPR: a universal tool for genome assembly evaluation
...mbly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual in...ies and other warnings, and produces a new broken assembly based on the error calls. The software requires...2942 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels u...2922 days ago
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2690 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...C is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially inten...reads: the reference read set, whose error rate is assumed to be small,...contains Illumina reads. Usually, errors in PacBio reads include many...2573 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and...ta. In addition to correcting substitution errors, we locate and correct inser...ata sets, we correct 94% of Illumina MiSeq errors, 88% of Ion Torrent PGM erro...2534 days ago