Results for "Matrix"
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
...elling shifts of environmental conditions over time. The dispersal matrix describing the movement of individuals among sub-populations can be replaced by a connectivity matrix and a reduced dispersal matri...2764 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RN...1117 days ago
- ...nbsp;UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective...
2570 days ago
LIBSVM -- A Library for Support Vector Machines
...Efficient multi-class classification Cross validation for model selection Probability estimates Various kernels (including precomputed kernel matrix) Weighted SVM for unbalanced...2460 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
...s platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts the top...2320 days ago
Many-to-many pairwise alignments of two sequence sets
..., by exploring all possible alignments and choosing the best. A scoring matrix is read that contains values...an alignment is equal to the sum of the matches taken from the scoring matrix, minus penalties arising from...2139 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...bsp;K-mer GC Processor. Creates a matrix of the number of K-mers found...K-mer comparison tool. Creates a matrix of shared K-mers between two...ty: Creates a density plot from a matrix created with the "comp" tool....rom selected rows or columns in a matrix produced by the "comp"....1973 days ago
- d2Tools are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with the d2-sty...
2046 days ago
BLAST options, setting and defaults
...ic code to be used in BLASTX translation of the query n/a n/a default = universal default = universal default = universal n/a Matrix:substitution matrix to be used for amino acid com...1965 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective...1915 days ago
