Results for "PDB"
Blogs
List of motif discovery tools !
...structural motif A server to predict protein active site residues. PDBSite -- a database of the 3D s...uctural and functional information on the protein functional sites. PDBSiteScan -- A program for sear...1985 days ago
Bookmarks
- ...Downloader has a built-in repository containing the settings for common bioinformatics file-synchronization needs, including the Protein Data Bank (PDB) and National Center for Biot...
2617 days ago
eQuant : energy-based quality assessment of protein
...utilizes a coarse-grained energy model. The overall quality is calculated as well as the reliability of individual residues. You can submit single PDB files or archives containing...2498 days ago
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Pages
BioRuby :Ruby packages for biologist
...other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FANTOM database(Bio::FANTOM...3939 days ago
Top-level pages
- ...estimated that membrane receptors form 50 % of all drug targets in pharmacological research. However, membrane proteins are underrepresented in the PDB structure database. Since mem...
3939 days ago
List of In-silico Binding Site Prediction Tools
...e used for all structures in the dataset. PDBeMotif: http://www.ebi.ac.uk/pdbe-site/pdbemotif/ is an extrem...e of known ligand binding sites within the PDB which is navigable by PDB ide...tein. We have tested the algorithm against PDBbind, a large curated set of 1...3735 days ago
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Wire posts
News
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drug...mprovements when performing sequence searches. Reference http://www.rcsb.org/pdb/static.do?p=general_informati...
3886 days ago
- .../mutabind/index.fcgi/ MutaBind guides you through this process, step by step, starting with selecting a protein complex and inputting PDB code or uploading PDB files. You can also retrieve...
2881 days ago
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Fun
Bioinformatician become producer/director !!!
...arah Hit Tera Ligand Chal Gaya Har Din Jo Modeling Karega Genbank Ke Us Paar Proteomics Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure Dus Numb...3910 days ago
Bio-Scripts
Command line to download blast database / protein
...ftp.ncbi.nlm.nih.gov/blast/db/ # Database detail / description nr.*tar.gz | Non-redundant protein sequences from GenPept, Swissprot, PIR, PDF, PDB, and NCBI RefSeq #First ru...935 days ago
Downloading mmseqs databases !
...Nucleotide - https://ftp.ncbi.nlm.nih.gov/blast/db/FASTA - PDB Aminoacid - https://www.rcsb.org - PDB70 Profile...934 days ago
Tags
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drugs and drug targets- Improved interface for 3D visualisation using Jmol/JSmol- An update to the representation of protein symmetry and stoichiometry.- Improvements when performing sequence searches. Reference ...
Tags: PDB, RCSB, Protein, New Release
3886 days ago
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