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Comment on "Sibelia: A comparative genomics tool"
...can become very piled with larger number of genomes. To overcome this, plot only big blocks, see section...en, while blocks from negative strand are red. By default, "Sibelia" plots only blocks obtained after t...1276 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...again (You will need the modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assem...bly? What do you think contamination would look like in the kmer plot? What can the kmer graph tel...1328 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in a synteny plot. Find more at http://bibiserv...3666 days ago
Comment on "R and Bioconductor Tutorial"
DotPlot for Protein Sequences using R @ http://www.biogem.org/blog/dotplot-for-protein-sequences-using-r/ Frequency Plot for Protein Sequences using R @ http://www.biogem.org/blog/frequency-plot-for-protein-sequences-using-r/3877 days ago
Comment on "Bioinformatics Companies in India"
SciGenom Labs Plot no: 43A,SDF, 3rd floor A Block,CSEZ, Kakanad, Cochin Kerala - 682037 Phone: 0484 - 2413399 Fax: 0484 - 2413398 Email: info@scigenom.com #55, Fi...3911 days ago
