Results for "Rearrangement"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ostly been preserved by genome rearrangements, and so synteny blocks from...ing indicates conservation and rearrangements of certain evolutionary impo...measuring the extent of genome rearrangement using reversal distance as a...or the evolutionary and genome rearrangement studies for multiple strains...2601 days ago
Dynamic chromosome breakpoints !!!
...ns in the wrong place which usually create disaster (with few exceptions).These chromosome disaster or abnormalities involve the gain, loss or rearrangement of visible amounts of genetic...3544 days ago
- +2 more Blogs
Bookmarks
- Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
2979 days ago
- ...pair positions. Furthermore, multiple rearrangements in a single area of the geno...nbsp;their effects challenging. The Rearrangement Overview page describes the o...p; http://cancer.sanger.ac.uk/cosmic/help/rearrangement/overview
2764 days ago
- +12 more Bookmarks
Files
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes.
Tree illustrating the lack of interchromosomal rearrangement of the microchromosomes. No interchromosomal micro...s not listed). The overall pattern of microchromosome stability and rearrangement across the species is illustr...1978 days ago
Top-level pages
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/2475628 Reference-free SNP det...2232 days ago
Wire posts
Video
Genome + Epigenome = New Understanding of the Pathogens in Your Food
UC Davis's Bart Weimer describes foodborne pathogens and their proclivity for rapid genome rearrangement. The 100K Pathogen Genome Project he leads is using PacBio long-read sequencing t...3864 days ago
Tags
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately. More a...
Tags: Bioinformatics, Computational Biology, Svelter, Rearrangement
2979 days ago
- Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct
Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint
2979 days ago
- +9 more Tags
Comments
Comment on "List of non-commercial NGS genotype-calling software"
...a – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ]gridss – GRIDSS: the Genomic Rearrangement IDentification Software Suite...1133 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls variants based on a...2694 days ago
