Results for "Regions"
Blogs
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH) http://eh-dem...3930 days ago
Tools to detect synteny blocks regions among multiple genomes
...the same chromosome. These block regions have mostly been preserved by...onserved blocks and non-conserved regions to understand the mechanism a...ny server can be used for finding regions syntenic across multiple geno...pload files which contain synteny regions between two or more genomes a...2601 days ago
Dynamic chromosome breakpoints !!!
...etic material either between multiple chromosomes or between different regions of the same chromosome. Du...2F10.1371%2Fjournal.pcbi.0020014). In addition the study of breakpoint regions and non-breakpoint (stable) r...3543 days ago
Calling narrow and broad peaks from ChIP-Seq data
...out the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broa...3188 days ago
Computer simulation of genetic mechanism !!
...is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations....mulator HAP-SAMPLE An association simulator for candidate regions or genome scans http://www.ha...2965 days ago
Software and Tools to detect structure variation with long reads !!
...types of SVs using evidence from split-read alignments, high-mismatch regions, and coverage analysis. Pleas...tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illum...2598 days ago
- ...ls: inferCars Reconstructs contiguous regions of an ancestral genome. Given...rating a large number of contiguous ancestral regions (CARs). ANCESTOR A web serv...plications, insertions, and losses of genomic regions), and successfully accommodat...
2521 days ago
BBTools for bioinformatician !
...are based on the normal BBMap scoring, which is not necessarily the same as where the primers would bind naturally, though with highly conserved regions there should be no difference...2261 days ago
List of motif discovery tools !
...ANCHOR -- Prediction of Protein Binding Regions in Disordered Proteins Find...ts corresponding to the most highly conserved regions of proteins. CASTp -- co...h for ungapped alignments of highly conserved regions among a protein family or sup...1984 days ago
List of comparative genomics resources !
...CONDOR -- COnserved Non-coDing Orthologous Regions A database resource of devel...ate conserved non-coding blocks from upstream regions of putative orthologous gene...e models and identify putative cis-regulatory regions of RefSeq Gene Orthologs....668 days ago
