Results for "Report"
Bio-Scripts
Blast result parser with Perl and Bioperl
...This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hit, the following results are reported: # accesion number, length...2905 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2516 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2255 days ago
- ...Use multiple times for more verbosity --ncbi_error_report Control program execution environment report generation (if implemented)....
2117 days ago
Installing pb-assembly on Linux !
...# # Bioconda release. We instead provide an issue tracker for you to report # # issues to us at:...# # Bioconda release. We instead provide an issue tracker for you to report # # issues to us at:...2025 days ago
Setting up falconUnzip conda environments for genome assembly !
...# # Bioconda release. We instead provide an issue tracker for you to report # # issues to us at:...# # Bioconda release. We instead provide an issue tracker for you to report # # issues to us at:...1981 days ago
Download minikraken database !
...aken2_v2_8GB_201904_UPDATE/hash.k2d #Check for pe reads #kraken2 --use-names --threads 4 --db minikraken2_v2_8GB_201904_UPDATE --fastq-input --report evol1 --gzip-compressed --pai...1205 days ago
