Results for "Run"
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Comment on "Benchmarking Perl Module !"
...ogram should take the form of a subroutine that runs the code you want to benchma...my $result = MyModule::my_function(); } Run the benchmark: Call the timet...that exercises the functionality of the module, running the benchmark using the t...407 days ago
Comment on "Short-read assembly using Spades !"
...Ades: Quality control of raw reads: Before running the assembly, it is impor...rious tools such as Trimmomatic or FastQC. Running SPAdes: After quality con...ASTQ format. Evaluation of assembly: After running SPAdes, the next step is...407 days ago
Comment on "Short-read assembly using Spades !"
...ASTQ format, which contains the sequencing reads. If the reads are paired-end, they should be provided in separate files for each read. Run SPAdes: To run SPAdes, open the terminal and...412 days ago
Comment on "Basic command-line to run BLAST"
...shold, the word size, and the gap penalties. Perform the search: Once the query sequence and parameters have been set, the BLAST search can be run. This can be done online usin...415 days ago
Comment on "Sibelia: A comparative genomics tool"
..., called "fine" and "far". To run "Sibelia" on "Helicobacter_py...es some temporary files while running. By default these files...install "Circos" software 2. Run "Sibelia" 3. Run "Circos" in...is the number of stages. So, running with the stage file: 4...1276 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy...--directory setting is also used for storing temporary files during the run.The prefix of each input file...1277 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...smaller (but hopefully correct) contigs. Reapr runs pretty slowly, sadly, Reapr...otential problems with the contig names. If you run into any problems, run r...use assemblies based on the raw data for this. Run the command reapr perfec...1328 days ago
- ...her single-end or paired-end reads. The default running mode is paired-end and re...dances.h5 is a HDF5 binary file containing run info, abundance esimates, boo... estimated counts, TPM, effective length. run_info.json is a json file...
1352 days ago
Comment on "Setting up autoConTAMPR !"
...c9dbdb955 ---> 1ca0a9d66656Step 13/16 : RUN apt-get install -y curl &... cpan install App::cpanminus ---> Running in aabe5835266cReading pa...b40936daStep 15/16 : WORKDIR home/ ---> Running in 1e23f559d32fRemoving i...1433 days ago
Comment on "The Raku Programming Language"
Try online interface to run your Raku programs https://glot.io/new/perl6 A nice place to test and check the program on cloud1526 days ago
