Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3906 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http...3893 days ago
Bio related lectures from internationally renowned scientists!!!
...ia – San Francisco and Howard Hughes Medical Institute investigator, Professor Ron Vale, iBiology has grown to include over 300 seminars and short talks by the world’s le...3845 days ago
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COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-ac...3570 days ago
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REAPR: a universal tool for genome assembly evaluation
...n is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (at least 1000bp). Additionally, if a short insert Illumina library is al...2947 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on...scovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user de...2928 days ago
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