Results for "Suite"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...-60, 2009. PubMedCentral Improving SNP discovery by base alignment quality. Li H, Bioinformatics 27(8):1157-8, 2011. PubMed BEDTools: a flexible suite of utilities for comparing ge...3770 days ago
List of bioinformatics open source projects/software.
...flows AutoDock http://autodock.scripps.edu/ suite of automated docking tools B...nment EMBOSS http://emboss.sourceforge.net/ Suite of packages for sequencing, s...Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide...3747 days ago
List of In-silico Binding Site Prediction Tools
...a tool to calculate MIFs, alternatively AutoGrid (part of the AutoDock suite developed by Arthur Olson&rsq...g-site into a correlation vector. We show that this shape descriptor is suited for comparative analyses of...3734 days ago
Next generation sequencing in R or bioconductor environment
...overage. Documentation biomaRt The biomaRt package, provides an interface to a growing collection of databases implementing the BioMart software suite (http:// www.biomart.org). Th...3615 days ago
Commercial and public next-gen-seq (NGS) software
...eline for short DNA sequences produced on a Illumina Genome Analyzer. A suite created by the 1001 Genomes p...Smith Genome Sciences Centre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See above. VCAKE - De novo...3509 days ago
Software packages for next gen sequence analysis
...eline for short DNA sequences produced on a Illumina Genome Analyzer. A suite created by the 1001 Genomes p...ith Genome Sciences Centre. Perl/Linux. * SOAPdenovo - Part of the SOAP suite. See above. * VCAKE - De nov...3233 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...IM, and TCGA databases Lasergene Genomics Suite Comprehensive NGS software...tGene_UsersManual_web.pdf Partek Genomics Suite Cited in over 3,500 peer-r...ersion available, but moving to LIMIX software suite; offers set tests- allows for...2899 days ago
Tools for Searching Repeats And Palindromic Sequences
...repeat. For example, the sequence 5' CGAAGC 3', if inverted (reversed 180°), still reads CGAAGC. The European Molecular Biology Open Software Suite (EMBOSS) includes some basic...2202 days ago
Awesome perl frameworks, libraries and software - PART 1
...-tools - A more capable DSH / cluster ssh suite skx/dhcp.io - Dynamic D...d/Test-Continuous - (Perl) Run your tests suite continusouly when developing....de reyjrar/DreamCatcher - DNS Monitoring Suite petdance/file-next - Fi...2480 days ago
Computational resources for TE discovery and TE detection
...loping new methods for their computational analysis. Following are the list of resource and location for TE discovery and TE detection: BLASTER suite http://urgi.versailles.i...2264 days ago
