Results for "Tools"


  • Useful Bioinformatics Tools

    Collections of few handy tools for bioinformatician

    Tags: Bioinformatics, Analysis, NGS, Tools, Gene, Genome, Format

    539 days ago

  • Gaze for gene prediction # Genes #Predictions #Genome #Tools #Gaze

    Tags: Predictions, Genome, Tools, Gaze

    539 days ago

  • Genome Assembly Tools and Software - PART1 !!

    The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short reads is usually highly memory-intensive, only a few assemblers, best suited for your assembly. For the sake of computational me...

    Tags: Bioinformatics, Genome, NGS, Assembly, Tools, Visualization

    418 days ago

  • Finding Patterns in Biological Sequences

    In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discov...

    Tags: Bioinformatics, Patterns, Tools, Book, Tutorial, Paper, Script, Algo

    423 days ago

  • MEME suite

    Motif based sequence analysis suits  The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The MEME Suite supports motif-based analysis of DNA, RNA and protein s...

    Tags: Bioinformatics, Analysis, Motif, Tools, Suite

    423 days ago

  • Harvest

    Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Harvest, Alignment, Tools

    383 days ago

  • MafTools

    maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widley accepted and used to store variants detected. The Cancer Genome Atlas Project has seqenced over 30 different cancers with sample...

    Tags: Bioinformatics, Maf, Tools, MafTools, Paint, Plot, Read

    367 days ago

  • Can you recommend me some interactive tools to visualize chromosomes?

    I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...

    Tags: Bioinformatics, Visualize, Chromosome, See, View, Genome, Tools

    367 days ago

  • Software and Tools to detect structure variation with long reads !!

    Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV variants. 8-10X PacBio coverage of single genomes or trios reveals triple the SVs ...

    Tags: Bioinformatics, LR, Long, Reads, Tools, Software, Pacbio, Genome, DNA, Sequence, NGS, SV, Variation, Structure

    340 days ago

  • TMAP - torrent mapping alignment program General Notes

    TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing technologies. The latest TMAP is unsupported. To use a supported version, please see the TMAP version associat...

    Tags: Bioinformatics, Torrent, Mapping, Tools, TMAP

    322 days ago