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Results for "Variation"

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  • Rahul Agarwal

    Learn Genetics Online

    Great source to learn genetics and other relevant stuffs online.

    Tags: genetics, epigenetics, variation

    3669 days ago

  • Rahul Agarwal

    http://churchill.nchri.org/ #genetic #variation

    Tags: genetic, variation

    3371 days ago

  • Jitendra Narayan

    #Scientists create world's largest catalog of #human genomic #variation http://www.genome.gov/27562711

    Tags: Scientists, human, variation

    3127 days ago

  • Jit

    #GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/

    Tags: GC, visualizing, variation, GC, genomic

    2618 days ago

  • Jit

    VG: variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

    Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled by sequences and ids edges, which connect two nodes via either of their respective ends paths, describe genomes,...

    Tags: VG, variation, graph, structures, interchange, formats, alignment, genotyping, variant, calling, methods, snp

    1550 days ago

  • Jit

    SvABA: Structural variation and indel detection by local assembly

    SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li. Contigs are assembled for every 25kb window (wi...

    Tags: SvABA, Structural, variation, indel, detection, local, assembly

    1508 days ago

  • Abhinav

    JBrowse 2: a modular genome browser with views of synteny and structural variation

    igvjs - a create-react-app with igv package from npm installed. the igv.js is instrumented to output "DONE" to the console when finished, and to have an increased fetchSizeLimit (which is otherwise git in CRAM longread tests) jb2-web - stock instance of jbrowse-web v1.7.5 jb1 - stock instance...

    Tags: JBrowse, modular, genome, browser, views, synteny, structural, variation

    366 days ago

  • LEGE

    Severus: a somatic structural variation (SV) caller for long reads

    Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching tumor/normal analysis, supports multiple tumor samples, and produces accurate and complete somatic and germline calls. Severus takes advantage of long-read phasing and uses the ...

    Tags: Severus, somatic, structural, variation, SV, caller, long reads

    26 days ago

  • John Parker

    galign: A Tool for Rapid Genome Polymorphism Discovery http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746318/ #SNP #Variation #galign #Genome

    Tags: SNP, Variation, galign, Genome

    3545 days ago

  • Jitendra Narayan

    BreakSeq2

    Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/breakseq2/archive/2.2.tar.gzFor other versions, see "releases". https://github.com/bioinform/breakseq2/rele...

    Tags: Bioinformatics, Computational Biology, Variation, Structure, BreakSeq2

    2978 days ago

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