Results for "alignment"
Comments
Comment on "Basic command-line to run BLAST"
...for matches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of s...411 days ago
Comment on "Basic command-line to run BLAST"
...ng any homology search. BLAST (Basic Local Alignment Search Tool) is a widely used...on about the sequences that matched the query sequence, including the alignment score, identity, and e-value....414 days ago
- DeepConflation based CNN model is used to generate alignment of fasta file . Model try to match a query string in a referance genome to provide location of match. https://github.com/gguptaiitd/DeepConflation
1137 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One option for b...1276 days ago
Comment on "Coronavirus Resources !"
UK resource in CoViD19 http://cov-glue.cvr.gla.ac.uk/#/home https://macman123.shinyapps.io/ugi-scov2-alignment-screen/1450 days ago
- ...sp; Apply samtools filters to alignment tracks captured by the list o...
1511 days ago
Comment on "Long read assembly workshop !"
Bacterial genome assembly tutorial http://evomics.org/learning/assembly-and-alignment/2017-assembly-lab/2030 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...verlapping ratio to cluster two skeletons or alignment records. [0.70] -s --max-skel...ons: -m --match-sc [INT] Match score for SW-alignment. [1] -M --mis-pen [INT] Misma...T] Minimum length of gap that causes a split-alignment. [100] -S --soft-clip Use sof...2113 days ago
- ...ch could identify all possible contamination sequences. QC3 QC3 a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling. qrqc&n...
2128 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...and used for mapping. Output SAM alignments will be in genome space (not...Assembly format. sam - Sequence Alignment/Mapping format. [auto] -L, --...ich algorithm should be used for alignment. Options are: sg - Myers' bit...- If specified, all (secondary) alignments within (-F FLT) will be outp...2283 days ago
