Tools to detect synteny blocks regions among multiple genomes
...www.genomatix.de/online_help/help_regionminer/orthologous.html) SyntenyMiner is being developed as an application to visualize and interrogate comparisons among multiple complete genom...2601 days ago
Basic command-line to run BLAST
...mp_based_stats compo] [-use_sw_tback] [-version] Now we can run the blast job. We will use blastp, which is appropriate for protein to protein comparisons. blastp -query cow.small...2235 days ago
2788 days ago
BLAST Ring Image Generator (BRIG)
...ss-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of gen...nd other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing automaticall...2765 days ago
Introduction to Bioinformatics
...ucture analysis: A practical guide. Topics of Evolutionary Computation VSNS BioComputing Division Bioinformatics -Primer on biosequence comparisons Algorithms in Molecular Biol...3912 days ago
Genome Assembly Tools and Software - PART2 !!
...k for determining the likelihood of an assembly given the data (raw reads) used to assemble it. It allows for the rapid discovery of errors and comparisons between similar assemblies....2676 days ago
3938 days ago
Bioinformatics Courses Around the World
...ent of growth of this new discipline To provide a resource for students, and academics and To access notes on the subject to allow some brief comparisons between courses. The gradu...3934 days ago
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3778 days ago
Marie Curie PhD position available immediately
...n will be required. A cytoscape app will be developed as visualization tool. Expected Results: MACE analysis pipeline. Database. Transcriptome comparisons in selected habitats. Data vi...3290 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #...1092 days ago
AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phylo- genetic information are supported. The user-friendly, web-browser based an...Tags: AliTV, interactive, visualization, whole, genome, comparisons
2298 days ago
KAST: Perform Alignment-free k-tuple frequency comparisons from sequences
Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.Tags: KAST, Perform, Alignment-free, k-tuple, frequency, comparisons, sequences
2045 days ago