Results for "de-novo assembly"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge a...analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3698 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two da...on process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chro...3543 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approac...all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV va...2598 days ago
String graph based genome assembly software and tools !
...ective of long lasting genome assembly problem ii) the paper is...o;. Following are the genome assembly tools based on string graph:...o the user at the start of an assembly project, this software will h...apers - i) The Fragment Assembly String Graph - E. W. Myers T...2319 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and R...ad length, which offers great prospects for genome assembly. Generally, assemblers are ba...OOK/NanoOK NanopolishNanopore analysis and genome assembly softwarehttps://github.com/jt...2311 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a lengt...a per-reference-sequence level, so if a bacterial assembly has more than one contig, you...from your existing data like this. Code: $ cat assembly1.fa assembly2.fa > combine...2261 days ago
- LiftOver is a necesary step to bring all genetical an...(1) Convert genome position from one genome assembly to another genome assembly In most scenarios, we have k...not anymore mapped on GRch38 because the new assembly is now better built without i...
2150 days ago
- Download this https://github.com/trinityrnaseq/trinityrnas...ibuted_trinity_exec :do not run Trinity phase 2 (assembly of partitioned reads), and st...# --workdir :where Trinity phase-2 assembly computation takes place (defa...
2124 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For prot...1984 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use tw... run produces usually high quality assembly, example of a command that wa...tions about read inclusion in the final assembly *.gfa : file containing...1935 days ago
