Genetic Algorithms demonstration with word DNA in Perl
...mper; # individuals in the population my $popsize = 1024; # a good starting point my $dna_lengt...} } __DATA__ about algorithm and biology by century come computer electronics evolution fiel...2363 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage...rim = min($sLen - $sEnd, $lLen - $lEnd); ## Only continue on if there's a good lik...2299 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning...RESHOLD] [--extra_middle_trim_good_side EXTRA_MIDDLE_TRIM_GOOD_SIDE] [--ext...(default: 85.0) --extra_middle_trim_good_sid...2097 days ago
1194 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Brian Bushnell Last modifie...ts quality reduced. markdeltaonly=t (mdo) Only mark bad bases adjacent to good bas...967 days ago