Results for "phylogenetic"

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  • Online Newick Tree Viewer http://etetoolkit.org/treeview/ #Tree #Newick #Onine #ETE #Phylogenetic

    Tags: Tree, Newick, Onine, ETE, Phylogenetic

    893 days ago

  • Phylogenetic & Molecular Genetics Terms and Definitions

    analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or species from which some other organism, population, or species is descended by reproduction. apomorphy -- specialized (=derived) characters of an org...

    Tags: Phylogenetic, Molecular, Genetics, Terms, Definitions

    125 days ago

  • #PhySortR: a fast, flexible tool for sorting #phylogenetic trees in #R https://peerj.com/articles/2038/

    Tags: PhySortR, phylogenetic, R

    574 days ago

  • RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

    RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly. Availability: RAMI is licensed under GNU GPL and can be run or downloaded from&n...

    Tags: RAMI, tool, identification, characterization, phylogenetic, clusters, microbial, communities

    126 days ago

  • Harvest: a suite of core-genome alignment and visualization tools

    Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, recombination detection, and phylogenetic trees. Tools Parsnp - Core-genome alignment and analysis Gingr - Interactive ...

    Tags: Harvest, alignment, visualization, intraspecific, microbial, genomes, recombination, detection, phylogenetic, trees

    3 days ago

  • kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

    Sept. 20, 2017 Version 3.1 released. Major upgrade. Version 3.1 fixes the problems with SNP annotation that arose when NCBI discontinued use of GI numbers. Please read carefully the Preface (page 3) and the File of annotated genomes section (pages 9-10) in the version 3.1 User Guide. Thanks to To...

    Tags: kSNP3.0, SNP, detection, phylogenetic, analysis, genomes, alignment, reference, genome

    3 days ago