Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least for academic institutes) and/or popular docking tools. AutoDock Stochastic ...Tags: Ligand, Docking, Tools, Software, Protein
2193 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, and properly dealing with molecular flexibility and conformational changes. Following are the tools to predict the structu...Tags: Tools, Protein-Protein, Docking, Software, Protein, Prediction, Interation
2193 days ago
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2188 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, seehttp://arthropods.eugenes.org/EvidentialGene/Construction refers to the co...Tags: EvidentialGene, tr2aacds, mRNA, Transcript, Assembly, Software, Tools
2180 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many transcript assemblies is much better than too few. It allows one then to apply biological criteria to pick out the best ones. Don't be misled by the "right number" of transcripts th...Tags: EvidentialGene, tr2aacds, mRNA, Transcript Assembly, Software
2034 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. GenomeThreader was...Tags: GenomeThreader, Gene, Prediction, Software
2032 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite
1440 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falcon https://github.com/PacificBiosciences/pb-assembly 2 Canu assembler http://canu.readthedocs.io/en/latest/index.html 3 Miniasm assembler https://github.com/lh3/miniasm 4 PBJelly scaffolding tool https://...Tags: List, bioinformatics, tools, Software, Website, References, genome, assembly
1335 days ago
Bioinformatics Scientist/Research Software Engineer at University of Dundee Dundee, United Kingdom
We are recruiting for an exceptional individual to join us as a computational scientist, bioinformatician, or (research) software engineer with an interest in interactive data analysis platforms for biology and medicine within our Jalview (www.jalview.org) research software engineering team. M...Tags: Bioinformatics, Scientist, Research, Software, Engineer, University, Dundee, Dundee, United Kingdom
1339 days ago