Bioinformatics is a rapidly growing field at the intersection of biology, computer science, and data analytics, with applications in healthcare, genomics, drug discovery, and more. As demand increases for skilled professionals who can manage,...
The variantcalling.nf nextflow script will take any number of samples with paired-end reads in FASTQ format, map reads using Bowtie2, process BAM files, and finally call variants using BCFtools v1.21 and/or Freebayes v1.3.6. If part of the...
GATB Library. The Genome Analysis Toolbox with de-Bruijn graph. A large part of tools developed by the GenScale team are based on this library.These methods enable the analysis of data sets of any size on multi-core desktop...
Study Resources for
ECM3413 - Bioinformatics
Contents
General Information
Lecture Slides
Past Exam Paper
Continuous Assessments
Suggested Reading List
General Information
This module runs in Semester 2.
It is...
R Package to visualize alignments between two or multiple DNA sequences includinga number of functionalities to facilitate processing of alignments in PAF format.
SVbyEye, an open-source R package to visualize and annotate sequence-to-sequence...
Description
LoVis4u is a bioinformatics tool for Loci Visualisation.
LoVis4u, a command-line tool and Python API designed for highly customizable and fast visualisation of multiple genomic loci. LoVis4u generates vector images in...
Tool for plotting sequencing data along genomic coordinates.
FIGENO is a
FIGure
GENerator
for GENOmics
With figeno, you can plot various types of sequencing data along genomic coordinates. Video...
NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes
NGenomeSyn [multiple (N) Genome Synteny], for publication-ready visualization of syntenic relationships of...
If you need to downgrade your Perl version, here’s a step-by-step guide to help you through the process. This guide assumes you're using a Unix-like system and have some familiarity with the command line.
Downgrading Perl
1. Uninstall...
This is the online version of the second edition of Modern Statistics with R. It is free to use, and always will be. Printed copies are available from CRC Press.
Live online courses on statistics with R based on this book,...
Our dengue virus lineage system splits up the current genotypes into major and minor lineages to provide additional spatiotemporal resolution and a common language to discuss important genomic diversity. A full description of the lineage system can...