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• • BioStar@biostar

  

  BioStar published a news post Mpox Public Health Emergency of International Concern 98 days ago

  The World Health Organization Health Organization (WHO) declared the mpox outbreak a Public Health Emergency of International Concern
• • LEGE@lege

  

  LEGE bookmarked HELIANO: A fast and accurate tool for detection of Helitron-like elements 100 days ago

  Helitron-like elements (HLE1 and HLE2) are DNA transposons. They have been found in diverse species and seem to play significant roles in the evolution of host genomes. Although known for over twenty years, Helitron sequences are still challenging...

  https://github.com/Zhenlisme/heliano/
• • LEGE@lege

  

  LEGE published a news post New BLAST Core Nucleotide Database (core_nt) 100 days ago

  https://ncbiinsights.ncbi.nlm.nih.gov/2024/07/18/new-blast-core-nucleotide-database/
• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs The Sheppard Lab 104 days ago
• • LEGE@lege

  

  LEGE created a page Tools to access the quality of your assembled genome ! 104 days ago

  FASTA VALIDATOR + SEQKIT RMDUP: FASTA validation GENOMETOOLS GT GFF3VALIDATOR: GFF3 validation ASSEMBLATHON STATS: Assembly statistics GENOMETOOLS GT STAT: Annotation statistics NCBI FCS ADAPTOR: Adaptor contamination pass/fail NCBI...
• • LEGE@lege

  

  LEGE bookmarked 1000 Genomes Chile Project 105 days ago

  Welcome to Chile Sequence to Chile: A Genomic Exploration Project for the Future Genomics, the science that deciphers the complexity of DNA, immerses us in the world of life at its most basic level. On this journey into the depths of genetic...

  https://1000genomas.cl/
• • BioStar@biostar

  

  BioStar published a blog post Learn python with example 106 days ago

  Python projects
• • BioStar@biostar

  

  BioStar posted a new ad in the Opportunity Lecturer @ UEssex in Evolutionary Biology 107 days ago
• • BioStar@biostar

  

  BioStar bookmarked GenoFig: a user-friendly application for the visualization and comparison of genomic regions 107 days ago

  Tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It is an independent recoding of Easyfig 2 initially developped by at the S. Beatson Lab [https://mjsull.github.io/Easyfig/] Download the GenoFig...

  https://forgemia.inra.fr/public-pgba/genofig
• • BioStar@biostar

  

  BioStar bookmarked UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and... 107 days ago

  UnCoVar: Workflow for Transparent and Robust Virus Variant Calling, Genome Reconstruction and Lineage Assignment Using state of the art tools, easily extended for other viruses Tool and database updates for critical components via...

  https://ikim-essen.github.io/uncovar/
• • Abhi@abhinav

  

  Abhi published a blog post Meta-Transcriptomics: Dynamic World of RNA in Diverse Environments 113 days ago

  Meta-transcriptomics combines high-throughput sequencing technologies with computational biology to profile the RNA content of a sample.
• • Abhi@abhinav

  

  Abhi bookmarked Bioinformatics Workshops ! 113 days ago

  When delving into bioinformatics, having access to reliable resources is crucial for effective research and analysis. Key online resources include the National Center for Biotechnology Information (NCBI), which offers tools like BLAST for sequence...

  https://evomics.org/2024-workshop-on-genomics/
• • Abhi@abhinav

  

  Abhi bookmarked Variant Calling Resequencing-Based Genome Inference 113 days ago

  Variant Calling - Resequencing-Based Genome Inference Erik GarrisonUniversity of Tennessee Health Science CenterWorkshop on Genomics - Český KrumlovJanuary 12,...

  https://evomics.org/wp-content/uploads/2024/01/Variant-calling-Workshop-on-Genomics-2024-Cesky-Krumlov.pdf
• • Abhi@abhinav

  

  Abhi bookmarked DIY Transcriptomics 113 days ago

  A semester-long course covering best practices for the analysis of high-throughput sequencing data from gene expression (RNA-seq) studies, with a primary focus on empowering students to be independent in the use of lightweight and open-source...

  https://diytranscriptomics.com
• • BioStar@biostar

  

  BioStar created a page Important Bioinformatics Tools ! 114 days ago

  1. Ktrim: An extra-fast, accurate adapter trimmer for sequencing data. It processes FASTQ files from multiple lanes with minimal mismatching and over-trimming of adapters.2. BWA MEM: A reliable alignment tool (particularly for mapping ALT contigs...
• • BioStar@biostar

  

  BioStar published a blog post Basics of BLAST Programs ! 118 days ago

  The Basic Local Alignment Search Tool (BLAST) is a powerful bioinformatics program used to compare an input sequence (such as DNA, RNA, or protein sequences) against a database of sequences to find regions of similarity.
• • BioStar@biostar

  

  BioStar published a blog post Online resources on must-read papers in evolutionary biology 118 days ago

  A while ago we posted a request for online resources on must-read papers in evolutionary biology, for a literature club. We received many answers in the meantime
• • Abhi@abhinav

  

  Abhi published a news post New Release of RefSeq ! 128 days ago

  https://ncbiinsights.ncbi.nlm.nih.gov/2024/07/15/refseq-release-225/
• • BioStar@biostar

  

  BioStar commented on a page titled Keep Your Important SSH Session Running when You Disconnect from Server !!! 136 days ago

  To block a node  srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash.sh
• • BioStar@biostar

  

  BioStar bookmarked Free resources to learn statistics 138 days ago

  Welcome to the course notes for STAT 414: Introduction to Probability Theory. These notes are designed and developed by Penn State's Department of Statistics and offered as open educational resources. These notes are free to use under...

  https://online.stat.psu.edu/stat414/

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