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• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs Abe lab／International Research Center for Infectious Diseases Laboratory of Bacterial Pathogenesis 10 hours ago
• • LEGE@lege

  

  LEGE published a blog post When Genes Leave Clues: Reading the Evolutionary Footprints of Life 10 hours ago

  This idea, known as phylogenetic profiling, is the foundation of Profylo (https://github.com/MartinSchoenstein/Profylo), an open-source Python toolkit developed for comparing evolutionary profiles and discovering co-evolving genes. Profylo brings...
• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs Ley Lab ! 10 hours ago
• • BioStar@biostar

  

  BioStar published a blog post The Genes That Travel Together: A Genomic Detective Story 11 hours ago

  Imagine looking through thousands of microbial genomes and discovering two genes that repeatedly appear together. The obvious conclusion is that they must somehow be connected—that perhaps they work together, participate in the same pathway, or...
• • BioStar@biostar

  

  BioStar published a blog post The Tree That Learned to Read Genomes 23 hours ago

  A recent study by Webster and Chapman introduces Buscogeny, an open-source bioinformatics pipeline designed to make this process easier. The tool uses BUSCO (Benchmarking Universal Single-Copy Orthologs), which identifies conserved genes that are...
• • BioStar@biostar

  

  BioStar answered the question Looking for some good bioinformatics recommendations—any suggestions? yesterday

  If you're looking for bioinformatics recommendations, here are some good areas and tools to explore: Sequence analysis: BLAST, Clustal Omega, MUSCLEPhylogenetics: MEGA, IQ-TREE, RAxMLRNA-seq analysis: FastQC, STAR, HISAT2, DESeq2Genome analysis:...
• • BioStar@biostar

  

  BioStar published a blog post The Gene Detectives: How a New Computational Tool Is Helping Us Read the History Written in Our... yesterday

  A recent study published in PLOS Computational Biology introduces REvolutionH-tl 2.0 (https://pypi.org/project/revolutionhtl/), a computational tool designed to help solve this mystery. The software analyzes protein sequences and identifies...
• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs Comparative genomics of gene expression lab 3 days ago
• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs Luo Lab | Symbiosis Genomics & Evolution 3 days ago
• • Jitendra Narayan@admin

  

  Jitendra Narayan published a blog post The Atlas of Nine Billion Possibilities 3 days ago

  This question led to the AlphaGenome Atlas (https://deepmind.google.com/science/alphagenome/atlas?), a detailed map of nearly every possible single-letter change in the human genome. Instead of checking each change one by one, researchers can use...
• • LEGE@lege

  

  LEGE published a blog post ViralQC: Checking If a Viral Genome Tells the Whole Story 4 days ago

  Viral sequences recovered from metagenomic data can be incomplete or contaminated with microbial DNA. ViralQC uses information from both DNA sequences and predicted proteins to detect contamination and estimate how complete a viral contig is.
• • BioStar@biostar

  

  BioStar published a blog post The Neighbourhood of a Resistance Gene 5 days ago

  When scientists find an AMR gene, it shows that resistance exists. However, it does not always reveal where the gene is or what is around it. This genetic context can give important clues about how resistance genes work, change over time, and...
• • Jitendra Narayan@admin

  

  Jitendra Narayan published a blog post The Day We Began Reading the DNA of the World 7 days ago

  Imagine waking up one day and realizing that somewhere in a laboratory, a scientist is reading the DNA of a whale. Somewhere else, another team is sequencing a rare plant, while researchers in India are decoding the genomes of diverse human...
• • LEGE@lege

  

  LEGE published a blog post The Hidden Pages of Our DNA 7 days ago

  It is enormous, billions of letters long. Some of those letters are easy to understand because they contain instructions for building proteins, the tiny machines that keep our cells alive.
• • LEGE@lege

  

  LEGE published a blog post A Subway Map for the Genome 8 days ago

  Instead of showing a genome as one long, confusing sequence, it displays different genomic paths like routes on a metro map. Where sequences are shared, the paths travel together. Where genetic variation occurs, they branch into different routes...
• • BioStar@biostar

  

  BioStar published a blog post When DNA Data Tells the Wrong Story - CrossFit assist to resolve ! 8 days ago

  Imagine comparing humans and chimpanzees to discover which genes make us different. You have millions of RNA-sequencing reads—but there is a catch: the computer may align these reads more easily to one species' genome than the other.
• • LEGE@lege

  

  LEGE published a blog post When Thousands of Bacterial Genomes Become One Giant Map 16 days ago

  Developed by Jérôme Arnoux and colleagues, PANORAMA is a computational tool designed to explore bacterial pangenomes—the complete collection of genetic possibilities found across a species or group of related organisms. Instead of looking at every...
• • LEGE@lege

  

  LEGE posted a new ad in the Opportunity PhD Studentship: Statistical Complexity in the Evolution of Biological Networks 16 days ago
• • Rishabh@curious_rishabh

  

  Rishabh is now a friend with LEGE 16 days ago

  • Rishabh@curious_rishabh

  

  • LEGE@lege

  
• • LEGE@lege

  

  LEGE is now a friend with Rishabh 16 days ago

  • LEGE@lege

  

  • Rishabh@curious_rishabh

  

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