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- BioJoker@biojoker
BioJoker posted a new ad in the Opportunity Assistant Professor job recruitment in University of Pune on temporary basis 2160 days ago
- Jit@jit.aber
Jit posted to the wire 2160 days ago

Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa #Pattern #Extract #Fasta
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2160 days ago

Fastq 2 fasta convert $ sed '/^@/!d;s//>/;N' sample1.fq > sample1.fa #fastq2fasta #fastqtwofasta
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2160 days ago

One liner to remove the description information from a fasta file and just keep the identifier $ perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #clean #header #fasta
- Rahul Nayak@rahul
Rahul Nayak commented on the bio-script Extract fasta sequence from a multifasta file with fasta header Ids 2160 days ago

perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number of sequences that you want to extract, then you most likely have the sequence identifiers in a separate file. Assuming that you have one...
- Jit@jit.aber
Jit commented on the fun Bioinformatics Jokes !! 2161 days ago

Someone ask a bioinformatician how to open the "Jar"? He suggested to download and install Java first. ;)
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

http://ms-utils.org/ #MassSpectrometry #tools #packages #databases
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://docs.microsoft.com/en-us/machine-learning-server/deployr/deployr-about #Rscripts #into #analytics #web #services
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

http://impala.molgen.mpg.de/ #metabolomics #proteomics #pathway #analysis
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://lipea.biotec.tu-dresden.de/home #Lipid #pathway #Analysis
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://irkernel.github.io/ #R #kernelfor #Jupyter #Notebook
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://github.com/jbytecode/rcaller #R #JAVA
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://archive.codeplex.com/?p=rclr #R #dotNET
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://www.rplumber.io/ #R #Rcode2webAPI
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://cran.r-project.org/web/packages/RGtk2/index.html #R #GUI
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2161 days ago

https://rstudio.github.io/packrat/ #R #production
- Aaryan Lokwani@aaryan
Aaryan Lokwani is now a friend with Rahul Agarwal 2161 days ago
Aaryan Lokwani@aaryan
Rahul Agarwal@raag
- Rahul Agarwal@raag
Rahul Agarwal is now a friend with Aaryan Lokwani 2161 days ago
Rahul Agarwal@raag
Aaryan Lokwani@aaryan
- BioJoker@biojoker
BioJoker posted to the wire 2162 days ago

Diagram https://github.com/d3/d3/wiki/Gallery #Plot #Visualisation
- Jit@jit.aber
Jit posted to the wire 2163 days ago

Machine learning meets genome assembly https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bby072/5074612 #genome #assembly #machine #learning