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• • LEGE@lege

  

  LEGE commented on the blog Tools for RNA classification 655 days ago

  There are several tools available for RNA classification, each with its own strengths and limitations. Here are some commonly used tools: Infernal: Infernal is a popular tool for RNA classification that uses a covariance model approach to...
• • LEGE@lege

  

  LEGE commented on the blog Basic command-line to run BLAST 655 days ago

  BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for identifying the function of a newly discovered gene or for understanding the evolutionary relationships between different...
• • BioStar@biostar

  

  BioStar commented on the blog How to install Perl modules manually, using CPAN command, and other quick ways in the group Perl *PIPERs 657 days ago

  To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL...
• • BioStar@biostar

  

  BioStar commented on a bookmark Perl Module Installation 657 days ago

  To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL...
• • BioStar@biostar

  

  BioStar created a page Type of SSR 658 days ago

  Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There are different types of SSRs based on the length and pattern of the repeated...
• • BioStar@biostar

  

  BioStar published a blog post Steps to find palindrome in genomes ! 658 days ago

  Palindromes are sequences of nucleotides that read the same backward as forward.
• • BioStar@biostar

  

  BioStar commented on the blog Tools to detect synteny blocks regions among multiple genomes 658 days ago

  Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conducting a genome synteny analysis: Choose the species: Select the species that you want...
• • BioStar@biostar

  

  BioStar commented on the blog Basic command-line to run BLAST 658 days ago

  Following steps need to followed while doing any homology search.  BLAST (Basic Local Alignment Search Tool) is a widely used program for searching a database of sequences to find those that match a query sequence. Here are...
• • BioStar@biostar

  

  BioStar published a blog post Common steps for reads mapping ! 658 days ago

  Mapping reads to a reference genome is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis.
• • BioStar@biostar

  

  BioStar published a blog post Common methods to discover tandem repeats 658 days ago

  Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome.
• • LEGE@lege

  

  LEGE posted a new ad in the ResearchLabs Rotifers Lab 658 days ago
• • BioStar@biostar

  

  BioStar bookmarked ALE: Assembly Likelihood Estimator 659 days ago

  Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly.  Depending on your genome size you may want to convert the .wig files to the BigWig format.

  https://github.com/sc932/ALE
• • BioStar@biostar

  

  BioStar created a new bio-script Raku script to find palindrome in genomes ! 659 days ago
• • BioStar@biostar

  

  BioStar created a new bio-script Perl script to find edit distance between two sequences ! 659 days ago
• • BioStar@biostar

  

  BioStar published a blog post Chromosome breakpoint - a breakup to remember 659 days ago

  Chromosome breakpoint refers to the physical location where a chromosome is broken and rearranged.
• • BioStar@biostar

  

  BioStar answered the question Why bioinformatics is important ? 659 days ago

  Bioinformatics is important for a number of reasons: Understanding biological data: With the explosion of genomic, transcriptomic, and proteomic data, bioinformatics tools and techniques are essential for analyzing and interpreting these data...
• • LEGE@lege

  

  LEGE asked Why bioinformatics is important ? 660 days ago
• • BioStar@biostar

  

  BioStar published a blog post Bioinformatics tools to explore SSRs in genomes ! 660 days ago

  There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as microsatellites.
• • BioStar@biostar

  

  BioStar created a new bio-script Perl script to find inverted repeats ! 660 days ago
• • BioStar@biostar

  

  BioStar commented on a page titled Elgg Installation steps ! 660 days ago

  If you need to uninstall all MySQL packages  sudo apt-get remove --purge mysql* sudo apt-get autoremove sudo apt-get autoclean

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