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Latest activity

• • Jit@jit.aber

  

  Jit created a new bio-script Remove the duplicated line present only next to each other with Perl 3153 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Remove duplicate lines with perl 3153 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked HTTDB - Horizontally transferred transposable elements database 3154 days ago

  Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is mediated by its own proteins and does not contribute to the survival...

  http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase/
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked PGAP-X: Extension on pan-genome analysis pipeline 3154 days ago

  PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different...

  https://pgapx.ybzhao.com/
• • Jit@jit.aber

  

  Jit posted to the wire 3154 days ago

  samtools view -f 256 Input.bam | awk '$6 ~/S/ && $7 == "=" {print $0}' > Secondary_clipped.sam
• • Jit@jit.aber

  

  Jit bookmarked Alfred: BAM Statistics and Feature Counting 3155 days ago

  The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies are included as submodules so you need to do a recursive...

  https://gear.embl.de/alfred
• • Jit@jit.aber

  

  Jit posted to the wire 3155 days ago

  Bioinformatics jobs at http://svimsbic.org/SRF_Notification.pdf #SVIMSBIC #Bioinformatics
• • Jit@jit.aber

  

  Jit bookmarked BioCircos.js is an open source interactive Javascript library to interactive display biological... 3158 days ago

  BioCircos.js is an open source interactive Javascript library which provides an easy way to interactive display biological data on the web. It implements a raster-based SVG visualization using the open source Javascript...

  http://bioinfo.ibp.ac.cn/biocircos/document/index.html
• • Jit@jit.aber

  

  Jit posted to the wire 3159 days ago

  git basic commands https://confluence.atlassian.com/bitbucketserver/basic-git-commands-776639767.html #git #commands #gitcommand
• • Robert M Willioms@robert

  

  Robert M Willioms posted a new ad in the Opportunity A computational postdoc position and a bioinformatician position 3159 days ago
• • Jit@jit.aber

  

  Jit created a new bio-script Plot the clock using Lastz -gerenal outfile 3159 days ago
• • Andaleeb@andaleeb

  

  Andaleeb asked ΔΔG value in I-mutant and iStable server 3160 days ago

  what may be the cause that ΔΔG value in I-mutant and iStable server different for same mutation, when the predictor for iStable is I-mutant? I-mutant ΔΔG value is -2.12 iStable ΔΔG value...
• • Rahul Nayak@rahul

  

  Rahul Nayak published a news post India and Germany to begin joint research in the area of 'Bioinformatics in Health Research' 3160 days ago

  To facilitate bilateral cooperation in biotechnology between the scientific communities of India and Germany, the Department of Biotechnology (DBT) will soon begin collaborative research in the identified priority area of 'Bioinformatics in Health...
• • Jit@jit.aber

  

  Jit bookmarked HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes 3161 days ago

  HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how likely it is to be horizontally transferred, and (iii) is fully automated (requires...

  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626719/
• • Jit@jit.aber

  

  Jit bookmarked GPOPSIM: a simulation tool for whole-genome genetic data 3161 days ago

  GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especially can...

  https://github.com/SCAU-AnimalGenetics/GPOPSIM
• • Rahul Nayak@rahul

  

  Rahul Nayak posted to the wire 3161 days ago

  Assessing an effective undergraduate module #teaching applied #bioinformatics to biology students http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005872
• • Jit@jit.aber

  

  Jit posted to the wire 3161 days ago

  get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa
• • Jit@jit.aber

  

  Jit answered the question Where to put my SSH keys? 3162 days ago

  move to ~/.sshcd ~/.sshchmod 400 ~/.ssh/id_rsayou can add the config file to easy access.
• • Neel@neelam

  

  Neel asked Where to put my SSH keys? 3162 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala created a page PerlOneLiner for Bioinformatician 3163 days ago

  FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say' # Double space a file, except the blank linesperl -pe '$_ .= "\n" unless /^$/'perl -pe '$_ .= "\n" if...

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