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• • Jit@jit.aber

  

  Jit bookmarked RAMI: a tool for identification and characterization of phylogenetic clusters in microbial... 2714 days ago

  RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices used in population and community studies on-the-fly. Availability: RAMI is licensed...

  https://academic.oup.com/bioinformatics/article-lookup/doi/10.1093/bioinformatics/btp051
• • Jit@jit.aber

  

  Jit posted to the wire 2714 days ago

  Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html
• • Jit@jit.aber

  

  Jit bookmarked PATRISTIC: a program for calculating patristic distances and graphically comparing the components... 2714 days ago

  PATRISTICv1.0 is a java program that calculates patristic distances from large trees in a range of file formats and allows graphical and statistical interpretation of distance matrices calculated by other programs.

  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1352388/
• • BioHack@biohack

  

  BioHack answered the question What is Phasing? 2714 days ago

  Phased data are ordered along one chromosome and so from these data you know the haplotype. Unphased data are simply the genotypes without regard to which one of the pair of chromosomes holds that allele.
• • BioHack@biohack

  

  BioHack asked What is L50 in genome assembly? 2714 days ago

  N50 describes a sequence length whereas L50 describes a number of sequences. What am really confused ...
• • BioHack@biohack

  

  BioHack is now a friend with Jit 2714 days ago

  • BioHack@biohack

  

  • Jit@jit.aber

  
• • Jit@jit.aber

  

  Jit is now a friend with BioHack 2714 days ago

  • Jit@jit.aber

  

  • BioHack@biohack

  
• • Jit@jit.aber

  

  Jit posted to the wire 2716 days ago

  #Phylogenetics #analysis https://bip.weizmann.ac.il/education/course/introbioinfo/03/lect12/phylogenetics.pdf
• • Jit@jit.aber

  

  Jit bookmarked Sequence - Evolution - Function; Computational Approaches in Comparative Genomics 2716 days ago

  Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as functional genomics. The book provides the reader with an understanding of the...

  https://www.ncbi.nlm.nih.gov/books/NBK20260/
• • Neel@neelam

  

  Neel commented on the blog Important Journals, Blogs and Forums for Bioinformaticians 2716 days ago

  Molecular Phylogenetics and Evolution https://www.journals.elsevier.com/molecular-phylogenetics-and-evolution accept bioinformatics pipeline. Impact 4.4 
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Loop over with perl 2717 days ago
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted a new ad in the Opportunity Bioinformatics opening at JNU 2718 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak commented on the blog Various scholarships around the world !! 2718 days ago

  EMBO fellowship http://www.embo.org/funding-awards/fellowships/long-term-fellowships#about
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra created a new bio-script Count the number of N in fasta file with Perl 2718 days ago
• • Neel@neelam

  

  Neel asked What is Phasing? 2719 days ago
• • Neel@neelam

  

  Neel bookmarked LIBSVM -- A Library for Support Vector Machines 2720 days ago

  LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it...

  https://www.csie.ntu.edu.tw/~cjlin/libsvm/
• • Neel@neelam

  

  Neel posted to the wire 2720 days ago

  Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size
• • Neel@neelam

  

  Neel created a new bio-script Extract the fastq sequence with range in Perl 2720 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak created a new bio-script Create a heatmap with R 2722 days ago
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked R tuorial 2722 days ago

  R learning resources https://flowingdata.com/

  https://flowingdata.com/

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