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• • Jitendra Narayan@admin

  

  Jitendra Narayan is now a friend with LAEEQ R KHAN 2867 days ago

  • Jitendra Narayan@admin

  

  • LAEEQ R KHAN@laeeq.khan4u

  
• • Jit@jit.aber

  

  Jit posted to the wire 2867 days ago

  Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools
• • Jit@jit.aber

  

  Jit posted to the wire 2868 days ago

  Know your quota on cluster. $ quota -u user1 #quota #cluster #Server
• • Martin Jones@martin

  

  Martin Jones commented on a bookmark Perl and BioPerl Tutorials in the group Perl *PIPERs 2868 days ago

  Perl books http://perltraining.com.au/notes.html https://github.com/vhf/free-programming-books/blob/master/free-programming-books.md#perl
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh bookmarked SeqMule: Automated human exome/genome variants detection 2868 days ago

  SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its...

  http://seqmule.openbioinformatics.org/en/latest/
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2868 days ago

  Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer
• • Jit@jit.aber

  

  Jit bookmarked GroopM: Metagenomic binning toolset 2868 days ago

  GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use:...

  https://github.com/ecogenomics/GroopM
• • Jit@jit.aber

  

  Jit bookmarked COCACOLA (binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and... 2868 days ago

  COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads LinkAge to automatically bin contigs into OTUs. Furthermore,...

  https://github.com/younglululu/COCACOLA
• • Jit@jit.aber

  

  Jit posted to the wire 2868 days ago

  Map the #density on #chromosome with perl https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1055-0
• • Jit@jit.aber

  

  Jit bookmarked PhenoGram 2868 days ago

  With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal...

  http://ritchielab.psu.edu/software/phenogram-downloads

  Comments

  • • Abhimanyu Singh@abhimanyu

    

    Abhimanyu Singh 2266 days ago

    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015356/
• • Jit@jit.aber

  

  Jit posted to the wire 2868 days ago

  Add color to vim. Open vi .vimrc and at the end of the file add "syntax on" #Vim #Syntax #Highlight #Vi #Linux
• • pradyumna Jayaram@pradyumnasagar

  

  pradyumna Jayaram is now a friend with Manisha Mishra 2869 days ago

  • pradyumna Jayaram@pradyumnasagar

  

  • Manisha Mishra@manisha

  
• • Manisha Mishra@manisha

  

  Manisha Mishra is now a friend with pradyumna Jayaram 2869 days ago

  • Manisha Mishra@manisha

  

  • pradyumna Jayaram@pradyumnasagar

  
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2869 days ago

  To generate ssh folder in linux $ ssh-keygen #Linux #ssh #Key #Connect
• • vinay rajput@vinayrajput

  

  vinay rajput is now a friend with Radha Agarkar 2869 days ago

  • vinay rajput@vinayrajput

  

  • Radha Agarkar@radhaagarkar

  
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar is now a friend with vinay rajput 2869 days ago

  • Radha Agarkar@radhaagarkar

  

  • vinay rajput@vinayrajput

  
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 2870 days ago

  sudo apt-get install libgd-svg-perl to install GD::SVG #Perl #Linux #Install #Graph #Plot
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh created a new bio-script Transpose the file coordinates and plot dendrogram in R 2870 days ago
• • Jit@jit.aber

  

  Jit bookmarked CONCOCT: Clustering cONtigs with COverage and ComposiTion 2870 days ago

  A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the...

  https://github.com/BinPro/CONCOCT
• • Jit@jit.aber

  

  Jit bookmarked MaxBin: software for binning assembled metagenomic sequences based on an Expectation-Maximization... 2870 days ago

  MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic...

  http://downloads.jbei.org/data/microbial_communities/MaxBin/MaxBin.html

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