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• • Jit@jit.aber

  

  Jit bookmarked GeneMANIA 3067 days ago

  Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function...

  http://genemania.org/
• • Jit@jit.aber

  

  Jit posted to the wire 3067 days ago

  du -sh * will give you the size of all the directories,files etc in current directory in human readable format. #Linux #Size #Tricks #Folders #Files
• • Archana Malhotra@archana

  

  Archana Malhotra bookmarked vcfR 3070 days ago

  Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for this data. The format of these files and their content is discussed in...

  https://cran.r-project.org/web/packages/vcfR/vignettes/visualization_1.html
• • Archana Malhotra@archana

  

  Archana Malhotra posted to the wire 3070 days ago

  NGS exercise http://wiki.bits.vib.be/index.php/NGS_Exercise.5 #NGS #VIB #Training #Exercise
• • Anjana@anjana

  

  Anjana posted a new ad in the Opportunity Senior Manager (Bioinformatics Operations) at RGCB, India 3071 days ago
• • Shyam I@shyam_ingle

  

  Shyam I is now a friend with Hardeep Kaur 3071 days ago

  • Shyam I@shyam_ingle

  

  • Hardeep Kaur@hardeep

  
• • Hardeep Kaur@hardeep

  

  Hardeep Kaur is now a friend with Shyam I 3071 days ago

  • Hardeep Kaur@hardeep

  

  • Shyam I@shyam_ingle

  
• • Jit@jit.aber

  

  Jit bookmarked TEannot 3071 days ago

  We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the...

  https://urgi.versailles.inra.fr/Tools/REPET/TEannot-tuto
• • Jit@jit.aber

  

  Jit bookmarked RepeatModeler 3071 days ago

  RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat...

  http://www.repeatmasker.org/RepeatModeler.html
• • Jit@jit.aber

  

  Jit bookmarked A5-miseq 3072 days ago

  _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_. Point to note: There are many situations where A5-miseq is not...

  https://sourceforge.net/projects/ngopt/
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra answered the question How to extract 50% of the reads? 3072 days ago

  I guess, it will be easier to "split by middle". My suggestions: Count the total number of reads -> use head or tail -n #num command to extract. 
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar asked How to extract 50% of the reads? 3072 days ago

  I would like to extract a subset of PE reads (50%) and store them in seperate files. It should be in both way "split by middle" or "random". Is there any way to achieve it?
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar posted a new ad in the Opportunity JRF Bioinformatics at MANIT, India 3072 days ago
• • Radha Agarkar@radhaagarkar

  

  Radha Agarkar is now a friend with karimse07 3072 days ago

  • Radha Agarkar@radhaagarkar

  

  • karimse07@karimse07

  
• • karimse07@karimse07

  

  karimse07 is now a friend with Radha Agarkar 3072 days ago

  • karimse07@karimse07

  

  • Radha Agarkar@radhaagarkar

  
• • Jit@jit.aber

  

  Jit posted to the wire 3072 days ago

  Bioinformatics openings at #IGIB https://www.igib.res.in/sites/default/files/30082016.pdf #Delhi #India #IGIB
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity Research Project at IIT, Madras 3073 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted a new ad in the Opportunity Senior Manager (Bioinformatics Operations) at RGCB, India 3073 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3073 days ago

  Determine your current Java version in Linux OS: java -Xmx90m -version #Java #Linux #Version
• • Jit@jit.aber

  

  Jit bookmarked KisSplice 3073 days ago

  KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number...

  http://kissplice.prabi.fr/

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