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• • EagleEye@santhilalsubhash

  

  EagleEye commented on the blog List of gene ontology software and tools 3733 days ago

  http://bioinformaticsonline.com/blog/view/28037/tool-gene-set-clustering-based-on-functional-annotation-genescf
• • EagleEye@santhilalsubhash

  

  EagleEye posted a new ad in the ResearchLabs Prof. Chandrasekhar Kanduri Laboratory 3733 days ago
• • EagleEye@santhilalsubhash

  

  EagleEye has a new avatar 3733 days ago

  
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra posted to the wire 3733 days ago

  #Extract all #Reads from #BAM file for a #region Chr10:18000-45500 using #samtools: samtools view input.bam "Chr10:18000-45500" > output.bam
• • Jit@jit.aber

  

  Jit posted to the wire 3733 days ago

  #Network #Visualization in #R #Tutorial http://kateto.net/network-visualization
• • Hardeep Kaur@hardeep

  

  Hardeep Kaur commented on a bookmark List of Bioinformatics Vacancy, Jobs, Opportunity websites 3733 days ago

  Thanks for all useful links. I found this job website also very useful https://www.timeshighereducation.com/unijobs/searchjobs/?Keywords=bioinformatics&radialtown=&LocationId=&RadialLocation=5
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3734 days ago

  #Extract #tabbed info from #BAM file with samtools: samtools view test.bam|awk '{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $4+length($10)-1}' > file.xls
• • Jit@jit.aber

  

  Jit bookmarked WgSim 3734 days ago

  Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution sequencing...

  https://github.com/lh3/wgsim
• • Jit@jit.aber

  

  Jit bookmarked Samtools Primer !! 3734 days ago

  SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, introductionRevisions    1.0: May 30, 2013: First public release on...

  http://biobits.org/samtools_primer.html
• • Jit@jit.aber

  

  Jit bookmarked Linux command line exercises for NGS data processing 3735 days ago

  The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience in writing one-liners. Copy the required files to your current directory, change directory (cd) to the linuxTutorial...

  http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/linux.html
• • Jit@jit.aber

  

  Jit created a page Cheatsheet for Linux !! 3735 days ago

  Linux Commands Cheat Sheet    File System    ls — list items in current directory    ls -l — list items in current directory and show in long format to see perimissions, size, an modification...
• • Jit@jit.aber

  

  Jit bookmarked NearHGT 3735 days ago

  Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the...

  http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004408
• • Jit@jit.aber

  

  Jit bookmarked DarkHorse 3735 days ago

  DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid...

  http://darkhorse.ucsd.edu/download.html
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Perl script to extract fasta sequence by matching name/ids !! 3736 days ago
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Perl script to extract lines with matching ids !! 3736 days ago
• • Shruti Paniwala@shruti

  

  Shruti Paniwala commented on a bookmark Next Generation Sequencing (NGS) Tutorials in the group Next Generation Sequencing (NGS) 3736 days ago

  A field guide to whole-genome sequencing, assembly and annotation http://onlinelibrary.wiley.com/doi/10.1111/eva.12178/full
• • Jit@jit.aber

  

  Jit answered the question Need help in Blastn? 3737 days ago

  Run blastn -help then look for the field called outfmt *** Formatting options -outfmt <String> alignment view options: 0 = pairwise, 1 = query-anchored showing identities, 2 = query-anchored no identities, 3 =...
• • Shruti Paniwala@shruti

  

  Shruti Paniwala asked Need help in Blastn? 3737 days ago

  I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.
• • Shruti Paniwala@shruti

  

  Shruti Paniwala is now a friend with karimse07 3737 days ago

  • Shruti Paniwala@shruti

  

  • karimse07@karimse07

  
• • karimse07@karimse07

  

  karimse07 is now a friend with Shruti Paniwala 3737 days ago

  • karimse07@karimse07

  

  • Shruti Paniwala@shruti

  

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