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• • Jitendra Prajapati@jprajapati81

  

  Jitendra Prajapati bookmarked Awesome bioinformatics pipelines ! 3819 days ago

  A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline

  https://github.com/pditommaso/awesome-pipeline
• • Jitendra Prajapati@jprajapati81

  

  Jitendra Prajapati posted a new ad in the Opportunity Wellcome Trust/DBT India Alliance Margdarshi Fellowships 2016 3820 days ago
• • Neel@neelam

  

  Neel answered the question Human chromosome length extractor ! 3821 days ago

  On linux OS you can extract human chromosome length with following command curl -s ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz | gunzip -c
• • Jitendra Prajapati@jprajapati81

  

  Jitendra Prajapati answered the question Human chromosome length extractor ! 3823 days ago

  You can try fetchChromSizes for this purpose.
• • Priya Singh@priyasingh

  

  Priya Singh asked Human chromosome length extractor ! 3824 days ago

  Is there any easiest known way to extract organism's chromosome length?
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted to the wire 3824 days ago

  #Print all line #except those #contains a letter "T" that is not immediately followed by a "H" with: grep -v 'T[^H]'
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh answered the question How to count the occurance of letters in fasta file? 3824 days ago

  Hmmm, I think grep can help you better  grep -v '^>' genome.fasta | tr -d '\n' | sed -e 's/\(.\)/\1\n/g' | sort | uniq -c | sort -rn
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted a new ad in the ResearchLabs BioinfoLab 3824 days ago
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted a new ad in the ResearchLabs Kamaleshwar Singh Lab 3824 days ago
• • Abhimanyu Singh@abhimanyu

  

  Abhimanyu Singh posted a new ad in the Opportunity SRF at NRCPB, New Deslhi 3824 days ago
• • Neel@neelam

  

  Neel answered the question Whar are N50 and L50 of a contig assembly file? How to calculate it? 3825 days ago

  from a Broad Institute site: "N50 is a statistical measure of average length of a set of sequences. It is used widely in genomics, especially in reference to contig or supercontig lengths within a draft assembly. Given a set of sequences of...
• • Poonam Mahapatra@poonam

  

  Poonam Mahapatra asked How to count the occurance of letters in fasta file? 3826 days ago

  I received a new genome to annotated. I need your help to quickly count the occurance of all the letters in fasta file.
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary bookmarked RNA-Seq De novo Assembly Using Trinity 3826 days ago

  Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules:...

  https://github.com/trinityrnaseq/trinityrnaseq/wiki
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted to the wire 3826 days ago

  #BAM file to #fastaq #conversion with #Samtool: samtools view filename.bam | awk '{OFS="\t"; print "@"$1"\n"$10"\n+\n"$11}' >| filename.fastq
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted to the wire 3826 days ago

  #BAM file to fasta #conversion with #Samtool: samtools view filename.bam | \ awk '{OFS="\t"; print ">"$1"\n"$10}' - > filename.fasta
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary posted to the wire 3826 days ago

  #Installing #python #pip https://pip.pypa.io/en/stable/installing/
• • Neel@neelam

  

  Neel posted to the wire 3827 days ago

  A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/
• • Nadia Baig@Nadia

  

  Nadia Baig answered the question how to determine @RG tags from a FastQ header?? 3828 days ago

  thank u
• • Jitendra Narayan@admin

  

  Jitendra Narayan has a new avatar 3828 days ago

  
• • Jitendra Prajapati@jprajapati81

  

  Jitendra Prajapati bookmarked GA4GH Data Working Group 3828 days ago

  GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Global Alliance brings together the leading Genome Institutes and Centers with IT industry leaders to create global...

  http://ga4gh.org/#/

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