BOL

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs...

Progressive alignment with Cactus: a multiple-genome aligner for the thousand-genome era https://www.biorxiv.org/content/biorxiv/early/2019/08/09/730531.full.pdf #Alignment #Cactus

Cactus is a reference-free whole-genome multiple alignment program. The principal algorithms are described here: https://doi.org/10.1101/gr.123356.111 Cactus uses substantial resources. For primate-sized genomes (3 gigabases each), you should...

Opening for Faculty positions (Assistant Professor, Associate Professor and Professor)

The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the...

cell-systems journal also accept tools papers https://www.cell.com/cell-systems/home

gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and...

Clustering Frankenstein https://www.r-bloggers.com/clustering-frankenstein/ #Clustering

A tool to monitor #git repositories and #automatically pull & push changes #gitomatic https://github.com/muesli/gitomatic