BOL: All Site Activity

All Site Activity

- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2141 days ago

Bioinformatics jobs University of Kolkata at http://www.caluniv.ac.in/news/professor-14-2-19/notice.pdf #Jobs #Kolkata #Bioinformatics
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2141 days ago

Script of scripts: A pragmatic workflow system for daily computational research https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006843 #SoS #Script #Analysis #Tools #Pipeline
- Rahul Nayak@rahul
Rahul Nayak is now a friend with Sanchari Sircar 2144 days ago
Rahul Nayak@rahul
Sanchari Sircar@Sanchari
- Sanchari Sircar@Sanchari
Sanchari Sircar is now a friend with Rahul Nayak 2144 days ago
Sanchari Sircar@Sanchari
Rahul Nayak@rahul
- Jit@jit.aber
Jit posted to the wire 2147 days ago

Human genome reads http://www.bcgsc.ca/downloads/btl/ntedit/paper/human/ #human #genome #reads #data
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh commented on the bio-script Estimate Genome Size 2148 days ago

# count k-mers (see jellyfish documentation for options) gzip -dc reads1.fastq.gz reads2.fastq.gz | jellyfish count -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t 30 /dev/fd/0 # generate a histogram jellyfish histo fastq.counts_0 >...
- Rahul Nayak@rahul
Rahul Nayak bookmarked dotPlotly: Generate an interactive dot plot from mummer or minimap alignments 2150 days ago

Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing

https://github.com/tpoorten/dotPlotly
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

NGS Exercise.4 https://wiki.bits.vib.be/index.php/NGS_Exercise.4 #Exercise #Learn #Plot #Circos #Genome #NGS #Tutorial
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

ALLHiC: identify allelic contigs https://github.com/tangerzhang/ALLHiC/wiki/ALLHiC:-identify-allelic-contigs #AllHic #Scaffolding #3C #ALLHiC
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

De novo genome assembly https://astrobiomike.github.io/genomics/de_novo_assembly #Genome #Assembly #DeNovo #Genome
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

Errors in sequence assembly and corrections (Bioinformatics) http://what-when-how.com/bioinformatics/errors-in-sequence-assembly-and-corrections-bioinformatics/ #Assembly #Error
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

Long read assembly workshop https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #Assembly #PacBio #Learn #Tutorial #Workshop
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2150 days ago

https://bioinformaticsdotca.github.io/high-throughput_biology_2017 #NGS #Tutorial #Learn #Assembly
- Jit@jit.aber
Jit published a news post BINC Exam merged with DBT- BET JRF Exam 2150 days ago

Bioinformatics National Certification (BINC) Exam conducted once per year by DBT has been now merged with DBT- BET JRF Exam
- Jit@jit.aber
Jit created a new bio-script Perl script to count occurrence of a character ! 2151 days ago
- Jit@jit.aber
Jit commented on the blog Ancestral sequence reconstruction (ASR) or ancestral gene/sequence reconstruction/resurrection... 2153 days ago

GASP: Gapped Ancestral Sequence Prediction for proteins https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-123
- Jit@jit.aber
Jit bookmarked IQ-TREE: Efficient software for phylogenomic inference 2153 days ago

A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time IQ-TREE found higher likelihoods between 62.2%...

http://www.iqtree.org/
- Jit@jit.aber
Jit bookmarked MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons 2153 days ago

MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons. MACSE is hence the first automatic solution to align protein-coding gene datasets containing...

https://bioweb.supagro.inra.fr/macse/index.php?menu=releases
- Jit@jit.aber
Jit posted to the wire 2153 days ago

polySNP: an analysis tool for quantitative sequencing https://www.nybg.org/files/scientists/dlittle/polySNP.html #SNP #polySNP #analysis #peak #Area
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted to the wire 2156 days ago

Mutalyzer website https://www.mutalyzer.nl/ #Mutation #Analysis

BOL

Our Sponsors

All Site Activity