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The Wire
#reads
Wire posts tagged with 'reads'
Jit
@jit.aber
Thread
By
Jit
2080 days ago
Human genome reads
http:/
/
www.bcgsc.ca/
downloads/
btl/
ntedit/
paper/
human/
#human
#genome
#reads
#data
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2083 days ago
Long read assembly workshop
https:/
/
www.melbournebioinformatics.org.au/
tutorials/
tutorials/
pacbio/
#Long
#Reads
#Assembly
#PacBio
#Learn
#Tutorial
#Workshop
Jit
@jit.aber
Thread
By
Jit
2127 days ago
I recommend two technologies: long reads to get the genome right, short reads to get the bases right.
#Genome
#Assembly
#Reads
#LonfReads
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2129 days ago
Long reads assembly tutorial
https:/
/
www.melbournebioinformatics.org.au/
tutorials/
tutorials/
pacbio/
#Long
#Reads
#PacBio
#assembly
#Genome
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2191 days ago
Long reads: their purpose and place
https:/
/
academic.oup.com/
hmg/
article/
27/
R2/
R234/
4996216
#Long
#reads
#informations
BioStar
@biostar
Thread
By
BioStar
2237 days ago
Understanding Paired End and Mate pair reads
http:/
/
www.biorigami.com/
wp-content/
uploads/
2012/
02/
PAIREDEND-MATEPAIR.pdf
#Reads
#Mate
#Pairs
#PE
#Reads
#MatePair
Jit
@jit.aber
Thread
By
Jit
2289 days ago
Scrubbing long reads
https:/
/
dazzlerblog.wordpress.com/
2017/
04/
22/
1344/
#Scrub
#Long
#Reads
#Pacbio
Jit
@jit.aber
Thread
By
Jit
2290 days ago
Long read extraction
https:/
/
github.com/
rrwick/
Unicycler/
wiki/
Read-extraction
#Reads
#Extractions
#Long
#PacBio
#Ont
Jit
@jit.aber
Thread
By
Jit
2454 days ago
Harness PacBio reads with assemblers
https:/
/
github.com/
PacificBiosciences/
Bioinformatics-Training/
wiki/
Large-Genome-Assembly-with-PacBio-Long-Reads
#Reads
#Assemblers
#PacBio
Jit
@jit.aber
Thread
By
Jit
2493 days ago
interleave fastq files
https:/
/
gist.github.com/
nathanhaigh/
4544979
#interleave
#fastq
#pair
#ngs
#reads
Jit
@jit.aber
Thread
By
Jit
2526 days ago
#Error
filtering, pair assembly and error
#correction
for next-generation sequencing
#reads
https:/
/
academic.oup.com/
bioinformatics/
article/
31/
21/
3476/
194979
Jit
@jit.aber
Thread
By
Jit
2553 days ago
Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq
#reads
#count
#ngs
#fastq
Jit
@jit.aber
Thread
By
Jit
2675 days ago
#Filter
out
#reads
with
#size
to discard reads containing many Ns. BBNorm (
https:/
/
sourceforge.net/
projects/
bbmap/
)
Jit
@jit.aber
Thread
By
Jit
2675 days ago
#Sickle
(
https:/
/
github.com/
najoshi/
sickle
) to
#trim
#reads
using a 20-Phred quality threshold
Jit
@jit.aber
Thread
By
Jit
2685 days ago
Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz
#Reads
#NGS
#Extract
#Pattern
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