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Geospatial data is becoming increasingly important in many fields, including urban planning, environmental science, public health, and more. These tools can help you work with data from a variety of sources, including satellite imagery, GPS data,...

Unique k-mers and distinct k-mers are related concepts in bioinformatics, specifically in the context of analyzing DNA or RNA sequences. Unique k-mers: These are k-mers (short sequences of DNA or RNA of length k) that occur only once in a given...

Glittr is a curated list of bioinformatics training material.All material is: In a GitHub or GitLab repository Free to use Written in markdown or similar NOTE: This list of courses is selected only based on the above criteria.There...

Benchmarking a Perl module involves measuring the performance of the module in terms of its execution time and memory usage. This can be done using the Perl Benchmark module, which provides a simple and standardized way to measure and compare the...

Phred scaling is a widely used system for representing the quality scores of sequencing reads. It is used to quantify the probability of an error in each base call in a sequencing read. Here is a quick guide to Phred scaling: Phred quality...

Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly. Here are the general steps for...

There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for Artificial Read Simulator) is a popular tool for generating synthetic reads based on...

If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl

Installing in CONDA env You can check using which perl - it should give you the perl that's located within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan...

Free AI/ML Books

Useful reading material https://statsandr.com/blog/anova-in-r/

To calculate the significance of the difference between two trends, you can use a statistical test such as a t-test or ANOVA (analysis of variance).

The bioinformatics chat is a podcast about computational biology, bioinformatics, and next generation sequencing. The bioinformatics chat is produced by Roman Cheplyaka and hosted by Roman and Jacob Schreiber.

Open source machine learning and data visualization. Build data analysis workflows visually, with a large, diverse toolbox.  

SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brief overview of how to use SPAdes for...

Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in the analysis of genomic and transcriptomic data. There are several tools available for sequence...

Differential expression analysis is a widely used technique in genomics and transcriptomics research that allows researchers to identify genes that are differentially expressed between two or more conditions or groups. There are several tools...