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- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2438 days ago

https://www.tidytextmining.com/ #text #mining #R
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2438 days ago

https://radimrehurek.com/gensim/index.html #topic #modelling #text #mining
- Rahul Agarwal@raag
Rahul Agarwal posted to the wire 2438 days ago

http://www.lipidmaps.org/ #lipidomics
- Jit@jit.aber
Jit posted to the wire 2439 days ago

Append something on filename. find -name "*H_*.scf" -exec rename 's/H_//' {} ";" #Append #Filename #find
- Jit@jit.aber
Jit posted to the wire 2439 days ago

Append to the file name. $ for filename in *.scf; do mv "$filename" "H_$filename"; done; #append #mv #rename
- Rahul Nayak@rahul
Rahul Nayak posted to the wire 2442 days ago

#Convert #fasta file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta
- Jit@jit.aber
Jit bookmarked MMseqs2.0: ultra fast and sensitive protein search and clustering suite 2443 days ago

MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The...

https://github.com/soedinglab/MMseqs2
- Sanjay@sanjaydeshpande
Sanjay is now a friend with Jit 2443 days ago
Sanjay@sanjaydeshpande
Jit@jit.aber
- Jit@jit.aber
Jit is now a friend with Sanjay 2443 days ago
Jit@jit.aber
Sanjay@sanjaydeshpande
- Sanjay@sanjaydeshpande
Sanjay is now a friend with Poonam Mahapatra 2443 days ago
Sanjay@sanjaydeshpande
Poonam Mahapatra@poonam
- Poonam Mahapatra@poonam
Poonam Mahapatra is now a friend with Sanjay 2443 days ago
Poonam Mahapatra@poonam
Sanjay@sanjaydeshpande
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 2443 days ago

Stats website http://www.statisticshowto.com/ #Learn #Stats
- Jit@jit.aber
Jit bookmarked EWAS: epigenome-wide association study software 2.0 2444 days ago

EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “population...

http://www.bioapp.org/ewas/
- Jit@jit.aber
Jit bookmarked ALPHA: A Toolkit for Automated Local Phylogenomic Analyses 2444 days ago

Automated Local Phylogenomic Analyses, or ALPHA, is a python-based application that provides an intuitive user interface for phylogenetic analyses and data visualization. It has four distinct modes that are useful for different types of phylogenetic...

https://github.com/chilleo/ALPHA
- Jit@jit.aber
Jit bookmarked repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric 2444 days ago

Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two contigs A and B is considered correct if: Their relative orientation is...

https://github.com/mandricigor/repeat-aware
- Jit@jit.aber
Jit bookmarked GMOL: An Interactive Tool for 3D Genome Structure Visualization 2444 days ago

GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve...

https://www.nature.com/articles/srep20802
- Jit@jit.aber
Jit posted to the wire 2444 days ago

Find matching file names with pattern in a directory. $ ls -dq *_name2search_* | wc -l #file #search #hits #pattern #names #directory
- Jit@jit.aber
Jit created a new bio-script Perl script to count the number of files in a directory with regex 2444 days ago
- Rahul Nayak@rahul
Rahul Nayak commented on a bookmark Perl Module Installation 2445 days ago

tar zxf Digest-SHA1-2.13.tar.gz cd Digest-SHA1-2.13 perl Makefile.PL make make test make install
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted to the wire 2445 days ago

EMBO course at http://meetings.embo.org/event/18-computational-evolution #EMBO #Course #Meeting "Evolution #Course

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