BOL

Ten steps to get started in #Genome #Assembly and #Annotation https://f1000research.com/articles/7-148/v1

NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq

Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally, Python is great for backend web development, data analysis, artificial...

Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in...

scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes being a surprise to our users, our public APIs are decorated to make it clear...

IAB is primarily being developed by Greg Caporaso(GitHub/Twitter: @gregcaporaso) in the Caporaso Lab at Northern Arizona University. You can find information on the courses I teach on my teaching website and...

Nice blog at http://bioinformatics.cvr.ac.uk/blog/

Bioinformatics Research and Applications https://link.springer.com/book/10.1007/978-3-642-38036-5 Publish bioinformatics tools

Bioinformatics tools are also accepted in "toxins" journals http://www.mdpi.com/journal/toxins

One the DVD tray in Ubuntu $ eject $ eject -t #Close #Tray #Ubuntu #DVD

Assigning subcellular localization to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive complement to time-consuming and...

Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo

A de novo genome assembly can be summarised b y a number of metrics, including: Overall assembly length Number of scaffolds/contigs Length of longest scaffold/contig Scaffold/contig N50 and N90Assembly base composition, in...

Chromosoma journal for chromosome and nucleus https://link.springer.com/journal/412

Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of RNA-Seq data. This webinar will give an overview of the workflow which includes...

You might need to create your own circos.highlight.txt and circos.segdup.txt file You can edit circos.segdup.txt to visualize all kind of overlapping blocks, for example  seq1132 is connected to seq1123, seq1124...