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- Abhimanyu Singh@abhimanyu
Abhimanyu Singh is now a friend with Jit 2764 days ago
Abhimanyu Singh@abhimanyu
Jit@jit.aber
- Jit@jit.aber
Jit is now a friend with Abhimanyu Singh 2764 days ago
Jit@jit.aber
Abhimanyu Singh@abhimanyu
- Jit@jit.aber
Jit voted on the poll How long have you been a bioinformatics scientist for? 2764 days ago
- Jit@jit.aber
Jit posted to the wire 2764 days ago

Perl OneLiner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/oneliners.html #Perl #Oneliner #NGS #Script
- Jit@jit.aber
Jit posted to the wire 2764 days ago

NGS onliner http://userweb.eng.gla.ac.uk/umer.ijaz/bioinformatics/subsetFASTAFASTAQ.html #OneLiner #NGS
- Jit@jit.aber
Jit answered the question How to run fastuniq? 2764 days ago

Ok ! fastuniq accept the name of fastq as a listfile. Create a listfile.txt and write both of your PE file name there, and call it with -i listfile.txt
- Bulbul@bulbul
Bulbul answered the question How to run fastuniq? 2764 days ago

Thanks but it does not accept both fastq files
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh bookmarked Mapping NGS 2764 days ago

NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it represents...To know that you have to align the sequences to the reference sequence. The reference sequence is in most cases...

http://wiki.bits.vib.be/index.php/Mapping_of_NGS_data
- Jit@jit.aber
Jit answered the question How to run fastuniq? 2764 days ago

Did you followed fastuniq help $ fastuniq-i : The input file list of paired FSATQ sequence files [FILE IN]Maximum 1000 pairs This parameter is used to specify a list of paired sequence files inFASTQ format as input, in which two adjacent files...
- Bulbul@bulbul
Bulbul asked How to run fastuniq? 2764 days ago

I wanted to remove the duplicates from fastq file. I planned to use fastuniq but it does not have good tutorial. Can you please tell me how to use it? http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0052249
- pradyumna Jayaram@pradyumnasagar
pradyumna Jayaram voted on the poll Which Bioinformatics Journals Do You Follow? 2765 days ago
Comments
- Tenzin Paul@tenzin
  
  Tenzin Paul 3517 days ago
  These are several journals I follow. One can see that Nature journal cover a very large spectra of audiences. Apart from that, I do like browsing
  
  Bioinformatics
  
  BMC Bioinformatics
  
  BMC Genomics
  
  BMC Systems Biology
  
  Cancer Research
  
  Genome Biology
  
  Genome Research
- Rahul Agarwal@raag
  
  Rahul Agarwal 3517 days ago
  there are other interesting journals:
  Nucleic Acid Research
  PLOS Computational Biology
  Nature methods
  G3
  Genome Annoucement
  Molecular Biology and Evolution
  Briefings in Bioinformatics
- Jit@jit.aber
  
  Jit 2747 days ago
  GigaScience; Impact factor 7.4
- BioStar@biostar
BioStar voted on the poll How long have you been a bioinformatics scientist for? 2765 days ago
- Neel@neelam
Neel posted to the wire 2765 days ago

splitbed to splitcov https://github.com/cyaguesa/Rscripts/blob/master/splitbed_to_splitcov.R #R #Coverage
- BioStar@biostar
BioStar voted on the poll Which Bioinformatics Journals Do You Follow? 2768 days ago
Comments
- Tenzin Paul@tenzin
  
  Tenzin Paul 3517 days ago
  These are several journals I follow. One can see that Nature journal cover a very large spectra of audiences. Apart from that, I do like browsing
  
  Bioinformatics
  
  BMC Bioinformatics
  
  BMC Genomics
  
  BMC Systems Biology
  
  Cancer Research
  
  Genome Biology
  
  Genome Research
- Rahul Agarwal@raag
  
  Rahul Agarwal 3517 days ago
  there are other interesting journals:
  Nucleic Acid Research
  PLOS Computational Biology
  Nature methods
  G3
  Genome Annoucement
  Molecular Biology and Evolution
  Briefings in Bioinformatics
- Jit@jit.aber
  
  Jit 2747 days ago
  GigaScience; Impact factor 7.4
- Jit@jit.aber
Jit bookmarked Enrichr: a comprehensive gene set enrichment analysis 2769 days ago

Enrichment analysis is a popular method for analyzing gene sets generated by genome-wide experiments. Here we present a significant update to one of the tools in this domain called Enrichr. Enrichr currently contains a large collection of diverse...

http://amp.pharm.mssm.edu/Enrichr/
- Jit@jit.aber
Jit bookmarked DIAMOND 2769 days ago

DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search on short reads and longer...

https://github.com/bbuchfink/diamond
- Archana Malhotra@archana
Archana Malhotra posted a new ad in the Opportunity RA Bioinformatics at JNU, New Delhi, INDIA 2769 days ago
- wuzx1234@wuzx1234
wuzx1234 is now a friend with Jitendra Narayan 2770 days ago
wuzx1234@wuzx1234
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with wuzx1234 2770 days ago
Jitendra Narayan@admin
wuzx1234@wuzx1234
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh answered the question How to resolve following error in MIRA? 2770 days ago

I think, MIRA is unable to termine the file format. "Could not determine filetype from data 'clean_Avaga2017.R1.fq' ("clean_a2017.R1.fq")" You should try renaming the *.fq to *.fastq , and re-run it again. Hope it gonna fix the error.

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