BOL: All Site Activity

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- Shruti Paniwala@shruti
Shruti Paniwala is now a friend with Marysia 2807 days ago
Shruti Paniwala@shruti
Marysia@marysia
- Thomas Hahn@tfh4
Thomas Hahn is now a friend with Jitendra Narayan 2810 days ago
Thomas Hahn@tfh4
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Thomas Hahn 2810 days ago
Jitendra Narayan@admin
Thomas Hahn@tfh4
- Hardeep Kaur@hardeep
Hardeep Kaur posted to the wire 2810 days ago

Open exFAT drive on Linux. $ sudo apt-get install exfat-fuse exfat-utils #Linux #exFAT
- Hardeep Kaur@hardeep
Hardeep Kaur is now a friend with Shruti Paniwala 2810 days ago
Hardeep Kaur@hardeep
Shruti Paniwala@shruti
- Shruti Paniwala@shruti
Shruti Paniwala is now a friend with Hardeep Kaur 2810 days ago
Shruti Paniwala@shruti
Hardeep Kaur@hardeep
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh answered the question CGAT installation error ?? 2810 days ago

It seems odd to me as you ask question without any explanation. I presume, you are working on Linux. You can use following commands to install it smoothly wget https://raw.github.com/CGATOxford/cgat/master/install-CGAT-tools.shchmod +x...
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary asked CGAT installation error ?? 2811 days ago
- Jit@jit.aber
Jit posted to the wire 2811 days ago

Pacbio pipeline http://www.cbcb.umd.edu/software/PBcR/ #Pacbio #Reads #Pipeline
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked BioStats class tutorial in the group Biostatistics 2812 days ago

Nice biostat turorial by Ingo Ruczinski

http://www.biostat.jhsph.edu/~iruczins/teaching/
- Shruti Paniwala@shruti
Shruti Paniwala joined the group Biostatistics 2812 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 2812 days ago

BioStats with R https://cran.r-project.org/doc/contrib/Seefeld_StatsRBio.pdf #R #BioStats #Example
- Archana Malhotra@archana
Archana Malhotra published a blog post Software and Tools to detect structure variation with long reads !! 2812 days ago

Structural variation caller tools using long reads
- Archana Malhotra@archana
Archana Malhotra bookmarked Pacbio Long Reads Compatible Software and Tools 2812 days ago

The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual...

https://github.com/PacificBiosciences/DevNet/wiki/Compatible-Software
- Jit@jit.aber
Jit bookmarked HTSlib 2812 days ago

Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists of three separate repositories: SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and...

http://www.htslib.org/
- Radha Agarkar@radhaagarkar
Radha Agarkar created a new bio-script Extract ids from file with perl 2812 days ago
- Jit@jit.aber
Jit posted to the wire 2813 days ago

PCA/clustering with R http://www.mattpeeples.net/kmeans.html #R #Cluster #PCA
- Jit@jit.aber
Jit bookmarked Multigenome assembly 2813 days ago

This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads...

https://github.com/MadsAlbertsen/multi-metagenome
- Jit@jit.aber
Jit posted to the wire 2814 days ago

#Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux
- Abhimanyu Singh@abhimanyu
Abhimanyu Singh posted to the wire 2814 days ago

#Random #sequence generator with #perloneliner : $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'

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