BOL

Thanks for the extensive list, I also have local list of journals. I paste here for the bioinformatics community. Hope helpful. Advances and Applications in Bioinformatics and Chemistry Advances in Bioinformatics Algorithms for Molecular...

Selecting the Right #Similarity-Scoring #Matrix https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848038/

Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

Know your quota on cluster. $ quota -u user1 #quota #cluster #Server

Perl books http://perltraining.com.au/notes.html https://github.com/vhf/free-programming-books/blob/master/free-programming-books.md#perl

SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its...

Assembly comparison https://github.com/WGLab/uniline/tree/master/src/assembly_comparison #NGS #Assembly #MUMMer

GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use:...

COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads LinkAge to automatically bin contigs into OTUs. Furthermore,...

Map the #density on #chromosome with perl https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1055-0

With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal...

Add color to vim. Open vi .vimrc and at the end of the file add "syntax on" #Vim #Syntax #Highlight #Vi #Linux

To generate ssh folder in linux $ ssh-keygen #Linux #ssh #Key #Connect