BOL: All Site Activity

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- Jit@jit.aber
Jit posted to the wire 3428 days ago

Do it yourself guide http://people.tamu.edu/~bilalwajidabbas/docs/Do_it_Yourself_Guide.pdf
- Jit@jit.aber
Jit posted to the wire 3429 days ago

Important PPT for Bioinformatics algo http://schatzlab.cshl.edu/teaching/2010/Lecture%202%20-%20Sequence%20Alignment.pdf #Algo #PPT #Pseudocode
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted to the wire 3429 days ago

Studentship at ACTREC http://www.actrec.gov.in/data%20files/Vacancies/2017/Walk-in-scin-stud-JRF-AV.docx
- Surabhi Chaudhary@surabhi
Surabhi Chaudhary posted a new ad in the Opportunity SRF Bioinformatics at JNU 3429 days ago
- Bulbul@bulbul
Bulbul posted a new ad in the Opportunity Studentship 3429 days ago
- Jit@jit.aber
Jit created a page Source Code and Pseudo Code !! 3430 days ago

An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely the sequence of steps taken to solve a problem. The steps are normally...
- Jit@jit.aber
Jit answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 3430 days ago

You might need to update the path of following in minimus2 script NUCMER=/home/Tools/MUMmer3.23/nucmerDELTAFILTER=/home/Tools/MUMmer3.23/delta-filterSHOWCOORDS=/home/Tools/MUMmer3.23/show-coords with re-installed mummer3 path. By default, it...
- Shruti Paniwala@shruti
Shruti Paniwala created a new bio-script Perl script to insert the DNA string in genome 3430 days ago
- Shruti Paniwala@shruti
Shruti Paniwala posted to the wire 3430 days ago

Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner
- Shruti Paniwala@shruti
Shruti Paniwala bookmarked PANDASEQ 3430 days ago

PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable...

http://neufeldserver.uwaterloo.ca/~apmasell/pandaseq_man1.html
- Neel@neelam
Neel answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 3430 days ago

I got this new error, and just wondering why ??? 1: PREPARING DATA2,3: RUNNING mummer AND CREATING CLUSTERS# reading input file "TESTDATA/minimus.fasta.ntref" of length 3144# construct suffix tree for sequence of length 3144# (maximum reference...
- EagleEye@santhilalsubhash
EagleEye commented on the news Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms 3432 days ago

Gene Set Clustering based on Functional annotation (GeneSCF) ---------------------- 13/01/2017 --------------------------- Due to recent changes (naming convention in FTP files) from the database KEGG (01/January/2017) and Gene...
- Lazoi Lifecare Private Limited@lazoi
Lazoi Lifecare Private Limited is now a friend with Jitendra Narayan 3432 days ago
Lazoi Lifecare Private Limited@lazoi
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Lazoi Lifecare Private Limited 3432 days ago
Jitendra Narayan@admin
Lazoi Lifecare Private Limited@lazoi
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on the blog Various scholarships around the world !! 3433 days ago

Science and Engineering Research Board (SERB; www.serb.gov.in) in partnership with the bi-national Indo-US Science and Technology Forum (IUSSTF; www.iusstf.org) announces the SERB Indo-US Postdoctoral Fellowships for Indian...
- Poonam Mahapatra@poonam
Poonam Mahapatra commented on the blog Various scholarships around the world !! 3433 days ago

The Polonsky Academy at the Van Leer Jerusalem Institute will award up to six Polonsky Postdoctoral Fellowships in the humanities or social sciences for up to five years, beginning October 1, 2017. The Fellowship offers an annual stipend of $40,000....
- Jit@jit.aber
Jit bookmarked SpeedSeq 3433 days ago

A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D B Rose, E P Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and interpretation. Nat Meth...

https://github.com/hall-lab/speedseq
- Jit@jit.aber
Jit bookmarked YAHA 3433 days ago

YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best alignment per query and is dramatically faster and more sensitive than both SSAHA2 and MegaBLAST at finding all possible alignments....

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3463118/
- Neel@neelam
Neel commented on a bookmark GenomeRing: alignment visualization based on SuperGenome coordinates 3435 days ago

http://bivi.co/visualisation/mizbee for more tool options

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