BOL: All Site Activity

All Site Activity

- KAMAL RAJ PARDASANI@kamalrajp
KAMAL RAJ PARDASANI posted a new ad in the Opportunity Post Doctoral Position 2892 days ago
- Sarkaft omer@Sarkaft
Sarkaft omer is now a friend with Jitendra Narayan 2893 days ago
Sarkaft omer@Sarkaft
Jitendra Narayan@admin
- Jitendra Narayan@admin
Jitendra Narayan is now a friend with Sarkaft omer 2893 days ago
Jitendra Narayan@admin
Sarkaft omer@Sarkaft
- Jit@jit.aber
Jit bookmarked Mauve: a system for constructing multiple genome alignments in the presence of large-scale... 2894 days ago

Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of...

http://darlinglab.org/mauve/mauve.html
- Jit@jit.aber
Jit answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 2894 days ago

Thanks for the update Neelam. This is specific problem of Mummer, /usr/bin/mummer: suffix tree construction failed: textlen=1584056222 larger than maximal textlen=536870908ERROR: mummer and/or mgaps returned non-zero so you might need to...
- Jit@jit.aber
Jit commented on an answer to a question 2894 days ago

Well, you might need to check the MeGAMerge log file for detail error message. Can you please reply with your error message from log file please?
- Jit@jit.aber
Jit answered the question Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 2894 days ago

Well, you might need to check the MeGAMerge log file for detail error message. Can you please reply with your error message from log file please?
- Neel@neelam
Neel asked Why MeGAMerge terminated with minimus.fasta 1>/dev/null 2>/dev/null failed: error 2894 days ago

I am trying to merge contigs, generated from different assemblies with MeGAMerge, but it failed after running few hour !! Following are the error I got on command prompt. Any suggestions?? perl MeGAMerge-1.1.pl -f MergedDIR...
- Neel@neelam
Neel published a news post Bioinformatics Contest 2017! 2894 days ago

Bioinformatics Contest 2017!
- Jit@jit.aber
Bulbul chose the best answer to the question How to resolve following Amos installation error ? 2895 days ago

You need to do lil hacking, yes hack it ;) Add this in the front group of src/Align/find-tandem.cc script of AMOS #include <getopt.h>
- Bulbul@bulbul
Bulbul commented on the fun BioGeek Fun 2895 days ago

How about this oneliner ;) perl -ne 'chomp;if( />(.*)/){$head = $1; $i=0; next};@a=split("",$_); foreach(@a){$i++;if($_ eq "N" && $s ==0 ){print "$head\t$i"; $s =1}elsif($s==1 && $_ ne "N"){print "\t$i\n";$s=0}}' infile.fa
- Jit@jit.aber
Jit answered the question How to resolve following Amos installation error ? 2895 days ago

You need to do lil hacking, yes hack it ;) Add this in the front group of src/Align/find-tandem.cc script of AMOS #include <getopt.h>
- Bulbul@bulbul
Bulbul bookmarked MEME suite 2895 days ago

Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. The MEME Suite...

http://meme-suite.org/
- Bulbul@bulbul
Bulbul created a new bio-script Perl script to remove the duplicate sequences from multifasta file 2895 days ago
- Bulbul@bulbul
Bulbul asked How to resolve following Amos installation error ? 2895 days ago

make[3]: Entering directory '/home/dept/Tools/amos-3.1.0/src/Align'g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/CelMsg -I../../src/Slice -I../../src/Common -I../../src/AMOS -I../../src/GNU -I../../src/Foundation -g -O2 -MT...
- Jit@jit.aber
Jit posted to the wire 2895 days ago

MACHTYPE variable to know what type of machine you are compiling the software on. echo $MACHTYPE #Linux #MACHTYPE
- Bulbul@bulbul
Bulbul posted to the wire 2895 days ago

RA and SRF at Indian Institute of Wheat & Barley Research http://www.dwr.res.in/sites/default/files/events/walkinjan2017.pdf #SRF #RA #WalkIn #IIWBR
- Bulbul@bulbul
Bulbul commented on the blog Computational Proteomics : Lets remember the basics 2895 days ago

One intersting periodic table here https://image-store.slidesharecdn.com/4d4490d7-6c08-4b54-be7e-bdd048182bc3-original.png
- Amala Arumugam@Amala
Amala Arumugam is now a friend with Neel 2895 days ago
Amala Arumugam@Amala
Neel@neelam
- Neel@neelam
Neel is now a friend with Amala Arumugam 2895 days ago
Neel@neelam
Amala Arumugam@Amala

BOL

Our Sponsors

All Site Activity